Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.5e-75 286.2 150 100.0
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.2e-66 254.2 143 91.6
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 5.3e-33 144.8 146 50.7
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.5e-32 143.3 143 49.7
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.4e-32 142.1 145 49.0
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.3e-31 140.2 145 49.0
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.8e-31 138.7 144 48.6
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.9e-31 138.3 145 49.0
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.1e-30 137.1 146 45.9
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.2e-30 135.6 143 50.3
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.2e-30 135.2 145 50.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 7.1e-30 134.4 145 46.9
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 7.1e-30 134.4 140 51.4
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.1e-30 134.4 145 49.7
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 9.3e-30 134.0 146 45.9
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.2e-29 133.7 146 47.3
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.6e-29 133.3 145 46.2
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.6e-29 133.3 146 45.9
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.6e-29 133.3 145 47.6
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 2.1e-29 132.9 145 46.9
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 2.7e-29 132.5 143 45.5
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.5e-29 132.1 145 44.8
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 4.6e-29 131.7 122 51.6
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 4.6e-29 131.7 145 45.5
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 6.0e-29 131.3 145 46.9
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 6.0e-29 131.3 143 45.5
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 6.0e-29 131.3 145 46.9
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 7.9e-29 131.0 145 46.9
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.0e-28 130.6 142 47.9
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.3e-28 130.2 145 46.2
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.3e-28 130.2 146 46.6
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.8e-28 129.8 143 47.6
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.9e-28 128.6 146 44.5
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.1e-28 128.3 146 44.5
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 5.1e-28 128.3 143 44.8
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.7e-28 127.9 145 43.4
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 6.7e-28 127.9 145 43.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 8.7e-28 127.5 143 45.5
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 8.7e-28 127.5 143 45.5
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.7e-28 127.5 143 46.9
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.5e-27 126.7 146 43.8
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.9e-27 126.3 122 50.8
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.5e-27 125.9 143 45.5
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.3e-27 125.6 146 46.6
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 3.3e-27 125.6 148 43.2
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 3.3e-27 125.6 145 42.8
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.3e-27 125.6 143 46.2
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 3.3e-27 125.6 143 47.6
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 4.3e-27 125.2 143 45.5
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 5.6e-27 124.8 144 45.1
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 5.6e-27 124.8 143 44.8
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.4e-27 124.4 143 46.2
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 9.6e-27 124.0 116 53.4
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.3e-26 123.6 143 45.5
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.3e-26 123.6 143 45.5
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.3e-26 123.6 143 42.0
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.3e-26 123.6 143 42.7
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.6e-26 123.2 146 43.2
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-26 123.2 116 53.4
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.8e-26 122.5 146 41.1
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 2.8e-26 122.5 145 44.1
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.8e-26 121.7 125 46.4
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 4.8e-26 121.7 146 41.1
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.8e-26 121.7 116 52.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.2e-26 121.3 146 41.1
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 6.2e-26 121.3 143 44.1
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 8.2e-26 120.9 143 43.4
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 8.2e-26 120.9 143 43.4
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.1e-25 120.6 143 44.8
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.1e-25 120.6 143 44.8
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-25 120.2 143 40.6
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.8e-25 119.8 145 43.4
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.8e-25 119.8 140 43.6
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.8e-25 119.8 146 45.2
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 2.4e-25 119.4 131 46.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.4e-25 119.4 120 49.2
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.4e-25 119.4 142 43.7
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 3.1e-25 119.0 142 43.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 3.1e-25 119.0 131 47.3
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 3.1e-25 119.0 143 42.0
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 4.0e-25 118.6 146 41.8
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 5.3e-25 118.2 143 43.4
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 6.9e-25 117.9 145 44.1
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.2e-24 117.1 140 42.1
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.2e-24 117.1 140 41.4
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.5e-24 116.7 126 50.0
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.5e-24 116.7 143 43.4
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.5e-24 116.7 121 46.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.5e-24 116.7 142 42.3
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.0e-24 116.3 121 47.1
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.4e-24 115.5 125 44.0
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.5e-24 115.2 119 47.1
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.0e-23 114.0 147 44.2
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.0e-23 114.0 143 40.6
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.7e-23 113.2 131 45.0
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.7e-23 113.2 131 45.0
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.2e-23 112.8 131 47.3
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.9e-23 112.5 125 44.0
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.9e-23 112.5 131 44.3
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.9e-23 112.5 131 44.3
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.9e-23 112.5 146 44.5
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.9e-23 112.5 132 41.7
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.5e-23 111.3 121 45.5
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 8.4e-23 110.9 131 44.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 3.2e-22 109.0 132 41.7
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 3.2e-22 109.0 145 40.7
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 5.5e-22 108.2 146 37.7
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 7.1e-22 107.8 131 44.3
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 9.3e-22 107.5 130 43.8
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 9.3e-22 107.5 130 43.8
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.2e-21 107.1 147 40.8
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.2e-21 107.1 131 42.0
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.1e-21 106.3 119 44.5
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.7e-21 105.9 131 42.7
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 3.5e-21 105.5 157 37.6
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 3.5e-21 105.5 129 42.6
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 4.6e-21 105.1 117 45.3
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.6e-21 105.1 135 43.0
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 6.0e-21 104.8 130 42.3
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.0e-20 104.0 131 44.3
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.3e-20 103.6 143 36.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 6.7e-20 101.3 121 43.0
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.1e-19 100.5 135 38.5
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 3.3e-19 99.0 134 39.6
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 3.3e-19 99.0 132 43.2
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 7.4e-19 97.8 146 36.3
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.3e-18 97.1 114 43.0
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 3.7e-18 95.5 121 42.1
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 3.1e-17 92.4 195 30.3
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.1e-17 92.0 125 40.0
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 5.3e-17 91.7 122 40.2
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.2e-15 86.3 134 37.3
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 2.5e-14 82.8 112 38.4
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.2e-14 82.4 145 34.5
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.4e-12 77.0 138 36.2
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 3.9e-12 75.5 122 36.1
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 8.8e-12 74.3 60 56.7
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 7.4e-11 71.2 73 47.9
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 6.3e-10 68.2 83 41.0
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 4.5e-08 62.0 59 49.2
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-07 60.8 61 45.9
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.1e-06 57.4 84 34.5
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.4e-06 57.0 63 42.9
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.2e-06 55.8 44 56.8
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 7.2e-06 54.7 77 37.7


User provided reference genes

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