Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 7.6e-197 690.3 339 100.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.1e-101 373.2 288 62.5
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 6.0e-101 371.7 286 63.6
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 5.8e-96 355.1 287 60.6
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.2e-95 353.2 293 59.4
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 8.4e-95 351.3 291 57.7
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.4e-94 350.5 291 58.8
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.2e-93 347.4 291 60.1
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.2e-93 347.4 295 58.6
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 1.0e-92 344.4 292 57.5
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.3e-92 343.2 302 57.6
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 1.1e-91 340.9 314 56.7
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.1e-91 340.9 292 55.5
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 2.5e-91 339.7 282 58.9
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 3.3e-91 339.3 303 56.1
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 9.6e-91 337.8 286 58.4
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.3e-90 337.4 292 57.2
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 1.3e-90 337.4 296 57.4
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.6e-90 337.0 292 57.2
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.1e-90 336.7 297 56.6
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 4.8e-90 335.5 293 55.6
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 4.8e-90 335.5 314 53.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 8.1e-90 334.7 298 56.7
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.1e-89 334.3 286 57.3
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 2.4e-89 333.2 314 52.5
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 3.1e-89 332.8 305 55.7
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.1e-89 332.8 302 56.0
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 3.1e-89 332.8 311 55.0
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 5.3e-89 332.0 296 55.1
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 5.3e-89 332.0 305 55.7
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 5.3e-89 332.0 294 55.8
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 6.9e-89 331.6 293 57.0
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.0e-89 331.3 302 55.3
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.2e-88 330.9 298 55.7
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 1.2e-88 330.9 291 56.7
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.2e-88 330.9 292 56.5
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 1.2e-88 330.9 293 58.0
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 1.5e-88 330.5 296 56.1
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.5e-88 330.5 302 55.3
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 2.0e-88 330.1 309 54.7
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.4e-88 329.3 302 55.3
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 4.5e-88 328.9 287 55.7
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.3e-87 327.4 293 55.6
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.7e-87 327.0 292 55.8
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 3.8e-87 325.9 295 55.9
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 3.8e-87 325.9 296 54.4
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 6.4e-87 325.1 299 55.9
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.1e-86 324.3 296 54.4
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.4e-86 323.9 292 53.4
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.4e-86 323.9 292 56.2
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.4e-86 323.9 297 54.9
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.9e-86 323.6 297 54.2
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 4.2e-86 322.4 292 54.8
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 7.1e-86 321.6 293 55.3
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.6e-85 320.5 294 55.4
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 3.5e-85 319.3 287 55.4
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 3.5e-85 319.3 291 54.6
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 4.6e-85 318.9 292 53.4
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 4.6e-85 318.9 292 55.8
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.0e-84 317.8 332 50.3
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.3e-84 316.6 307 53.1
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 3.9e-84 315.8 287 55.1
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 3.3e-83 312.8 314 49.7
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 4.3e-83 312.4 289 53.6
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 9.6e-83 311.2 280 56.4
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.3e-82 310.8 332 50.0
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.3e-82 310.8 293 53.9
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.6e-82 310.5 285 53.3
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 2.1e-82 310.1 292 53.4
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 6.2e-82 308.5 314 50.6
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.8e-81 307.0 289 54.7
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.8e-81 307.0 284 52.8
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 2.4e-81 306.6 281 53.0
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.2e-80 304.3 328 50.3
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 1.7e-79 300.4 296 52.0
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 2.9e-79 299.7 255 58.4
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 8.4e-79 298.1 319 50.2
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.1e-78 297.7 295 52.9
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 2.5e-78 296.6 318 50.0
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 4.2e-78 295.8 293 51.5
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 2.1e-77 293.5 285 51.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.3e-76 290.0 282 52.8
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 1.5e-75 287.3 257 55.3
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 4.3e-75 285.8 292 50.3
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 1.3e-74 284.3 231 59.3
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 4.0e-73 279.3 291 49.1
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 9.0e-73 278.1 260 53.5
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 1.3e-71 274.2 379 40.6
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 1.9e-70 270.4 280 50.7
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 3.0e-68 263.1 318 44.7
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.1e-67 261.2 250 53.2
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.6e-66 257.3 281 48.0
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 4.1e-65 252.7 224 57.1
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 3.4e-64 249.6 249 49.0
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.0e-63 248.1 296 45.9
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 3.8e-63 246.1 299 45.2
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 6.5e-63 245.4 230 54.3
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.4e-62 244.2 289 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 9.4e-62 241.5 300 42.0
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 3.7e-58 229.6 183 60.7
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 1.3e-55 221.1 173 62.4
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.4e-52 211.1 261 44.8
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.1e-51 208.0 173 59.0
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.0e-47 194.9 372 33.6
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.7e-45 186.8 304 35.5
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 5.3e-41 172.6 144 57.6
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 1.8e-33 147.5 157 50.3
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.0e-28 131.7 118 54.2
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 3.7e-26 123.2 109 54.1
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 2.3e-23 114.0 170 41.8
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.6e-23 112.5 124 47.6
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.1e-22 111.7 111 47.7
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.5e-22 109.4 124 46.8
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.5e-22 109.4 124 46.8
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.5e-22 109.4 124 46.8
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.2e-22 109.0 124 46.8
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-21 107.1 124 46.0
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.7e-21 106.3 111 45.9
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-20 104.8 111 44.1
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 7.5e-19 99.0 221 30.8
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-16 91.7 110 42.7
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.8e-16 89.0 74 51.4
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 7.8e-16 89.0 109 45.9
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 3.9e-15 86.7 142 38.0
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.5e-14 84.7 67 53.7
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-12 78.2 67 58.2
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-12 78.2 67 58.2
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-12 78.2 67 58.2
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.5e-11 74.7 74 45.9
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-11 74.7 63 60.3
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-11 73.9 52 67.3
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-11 73.9 131 38.2
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.9e-10 70.5 67 53.7
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 4.9e-10 69.7 87 42.5
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.4e-10 69.3 67 55.2
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.9e-07 60.1 111 32.4


User provided reference genes

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