Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 4.9e-77 292.0 278 100.0
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.5e-54 215.7 278 80.2
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 7.2e-52 208.4 278 69.1
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.5e-41 174.1 278 73.4
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 5.7e-41 172.2 274 77.4
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 1.7e-40 170.6 281 68.3
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.8e-40 169.1 279 73.5
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 1.1e-39 167.9 278 70.1
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.3e-39 165.6 274 73.7
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.6e-38 164.1 279 71.0
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 2.0e-38 163.7 279 65.2
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 4.5e-38 162.5 279 77.4
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.2e-37 160.2 279 65.6
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 2.9e-37 159.8 279 74.9
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.1e-36 157.9 278 68.0
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 2.5e-36 156.8 279 72.4
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 7.2e-36 155.2 278 74.5
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.1e-35 153.7 277 73.6
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-33 147.9 279 73.5
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.4e-33 146.4 279 70.3
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 3.4e-33 146.4 273 72.2
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 6.3e-32 142.1 275 58.5
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.4e-31 140.2 278 59.4
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.4e-31 140.2 274 65.3
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 2.4e-31 140.2 274 72.3
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.1e-31 139.8 300 65.3
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.7e-30 136.7 191 63.4
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.7e-29 134.0 278 67.6
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.9e-29 133.3 204 70.6
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 3.8e-29 132.9 274 67.5
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 5.0e-29 132.5 274 71.9
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.1e-28 131.3 234 78.2
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.5e-28 131.0 275 71.6
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 1.9e-28 130.6 204 74.5
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 3.3e-28 129.8 280 66.4
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 9.5e-28 128.3 205 77.6
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 1.6e-27 127.5 300 67.0
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 3.6e-27 126.3 274 73.0
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 3.6e-27 126.3 275 73.5
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 4.7e-27 125.9 234 77.4
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 4.7e-27 125.9 274 65.3
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.8e-26 124.0 189 63.0
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.3e-26 123.6 278 65.5
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 3.0e-26 123.2 189 59.8
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 6.8e-26 122.1 273 64.1
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 6.8e-26 122.1 273 70.3
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.2e-25 121.3 205 76.1
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.7e-24 117.5 273 62.3
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.2e-24 117.1 270 63.7
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 4.9e-24 115.9 234 70.1
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 8.3e-24 115.2 279 62.7
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.2e-23 113.2 273 56.8
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 4.1e-23 112.8 285 62.1
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 7.0e-23 112.1 276 69.9
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 7.0e-23 112.1 275 50.9
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.5e-22 109.8 191 63.9
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 4.5e-22 109.4 206 71.8
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 7.8e-22 108.6 234 64.1
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 1.0e-21 108.2 274 67.9
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.0e-21 108.2 191 63.4
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.7e-21 107.5 279 53.8
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.9e-21 106.7 206 71.8
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 8.6e-21 105.1 272 64.0
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.1e-20 104.8 203 43.8
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.5e-20 104.4 204 60.8
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.5e-20 104.4 276 64.1
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 1.9e-20 104.0 213 60.1
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.9e-20 104.0 204 64.2
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.5e-20 103.6 280 67.1
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 5.6e-20 102.4 213 59.6
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 7.3e-20 102.1 161 80.1
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 9.5e-20 101.7 206 73.8
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.2e-19 101.3 205 57.6
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.1e-19 100.5 279 58.1
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 2.8e-19 100.1 236 76.3
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 6.1e-19 99.0 213 62.0
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.4e-18 97.8 189 67.2
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.8e-18 97.4 301 65.4
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 1.8e-18 97.4 189 63.5
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.3e-18 97.1 237 60.3
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 2.3e-18 97.1 274 65.3
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 2.3e-18 97.1 218 65.1
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 3.1e-18 96.7 169 68.6
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 5.2e-18 95.9 196 74.0
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 5.2e-18 95.9 300 52.3
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.2e-17 94.7 191 56.0
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 4.4e-17 92.8 261 64.4
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 4.4e-17 92.8 213 65.3
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.4e-17 92.8 206 73.3
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 7.5e-17 92.0 277 63.2
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 2.2e-16 90.5 258 66.7
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 2.2e-16 90.5 159 86.8
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.9e-16 90.1 159 86.2
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 3.7e-16 89.7 163 71.2
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 3.7e-16 89.7 205 72.7
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.7e-16 89.7 205 72.7
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 8.3e-16 88.6 162 80.9
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 5.4e-15 85.9 182 40.1
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 7.0e-15 85.5 364 49.7
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 9.2e-15 85.1 163 65.0
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 9.2e-15 85.1 163 65.0
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 1.2e-14 84.7 195 63.6
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 2.0e-14 84.0 213 60.1
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 2.7e-14 83.6 306 54.2
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 3.5e-14 83.2 196 54.6
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.5e-14 83.2 191 59.7
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 3.5e-14 83.2 110 69.1
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 4.6e-14 82.8 309 49.2
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 4.6e-14 82.8 157 56.1
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.3e-13 81.3 160 69.4
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.7e-13 80.9 159 50.9
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 3.9e-13 79.7 160 65.6
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.0e-13 79.3 134 77.6
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 6.6e-13 79.0 273 54.2
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.1e-12 78.2 96 68.8
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.9e-12 77.4 185 67.0
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 2.5e-12 77.0 175 65.7
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 2.5e-12 77.0 234 64.1
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 5.6e-12 75.9 194 47.9
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 5.6e-12 75.9 203 68.5
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.6e-12 75.9 195 70.3
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.6e-11 74.3 158 61.4
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 2.1e-11 73.9 187 62.6
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 3.6e-11 73.2 234 65.8
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.2e-11 72.4 276 57.6
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 8.0e-11 72.0 160 69.4
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.1e-10 71.6 167 65.3
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.1e-10 71.6 178 57.9
Actinidia06603 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.4e-10 71.2 263 62.0
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 1.8e-10 70.9 206 44.2
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.8e-10 70.9 195 57.4
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 3.1e-10 70.1 194 51.0
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.1e-10 70.1 276 56.2
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.1e-10 70.1 180 50.0
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 5.2e-10 69.3 161 55.9
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 5.2e-10 69.3 252 63.1
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.8e-10 68.9 183 57.9
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 8.9e-10 68.6 75 76.0
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 1.2e-09 68.2 146 63.0
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.2e-09 68.2 279 53.0
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 1.2e-09 68.2 102 64.7
MD08G1229300 Malus domestica HOM05D003347 ORTHO05D003821 1.5e-09 67.8 145 52.4
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 2.6e-09 67.0 134 62.7
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 7.5e-09 65.5 159 59.7
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 7.5e-09 65.5 231 54.5
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 7.5e-09 65.5 164 66.5
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 7.5e-09 65.5 239 41.8
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 9.8e-09 65.1 77 67.5
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.2e-08 63.9 105 47.6
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 2.9e-08 63.5 224 58.5
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.9e-08 63.5 74 52.7
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 3.7e-08 63.2 94 66.0
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 1.4e-07 61.2 45 75.6
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 1.4e-07 61.2 184 58.7
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.4e-07 61.2 149 65.8
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.4e-07 61.2 175 68.6
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 1.9e-07 60.8 74 48.6
Cc07_g19150 Coffea canephora HOM05D003347 ORTHO05D003821 2.4e-07 60.5 189 55.6
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 3.2e-07 60.1 92 48.9
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 3.2e-07 60.1 45 71.1
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 5.4e-07 59.3 75 48.0
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 7.1e-07 58.9 94 47.9
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.2e-06 58.2 69 55.1
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.6e-06 57.8 73 53.4
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 2.7e-06 57.0 155 64.5
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.5e-06 56.6 175 49.1
AagrBONN_evm.TU.Sc2ySwM_228.2461 Anthoceros agrestis HOM05D003347 ORTHO05D003821 4.6e-06 56.2 163 68.7
AT1G10890 Arabidopsis thaliana HOM05D003347 ORTHO05D003821 6.0e-06 55.8 213 60.1


User provided reference genes

Program Settings