Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 6.7e-246 853.6 435 100.0
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 3.7e-135 485.7 415 63.6
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.0e-134 482.3 414 63.5
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 9.0e-134 481.1 334 73.4
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.0e-132 477.6 336 71.1
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.0e-132 477.6 417 61.4
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 9.3e-131 471.1 335 69.6
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 2.1e-130 469.9 418 60.8
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 2.1e-130 469.9 418 60.8
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.1e-130 469.9 418 60.8
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.0e-130 468.4 412 61.4
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.0e-129 467.6 333 71.8
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.0e-129 467.6 341 70.4
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 2.3e-129 466.5 336 71.7
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 2.3e-129 466.5 415 60.7
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 3.0e-129 466.1 372 64.8
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 5.1e-129 465.3 334 71.9
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 6.7e-129 464.9 331 71.3
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.5e-128 463.8 420 60.5
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 3.3e-128 462.6 395 62.3
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 3.3e-128 462.6 335 71.0
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 3.3e-128 462.6 336 72.0
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 4.3e-128 462.2 337 70.3
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 5.7e-128 461.8 342 69.3
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.7e-128 461.8 332 70.2
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.7e-128 461.8 332 70.2
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 7.4e-128 461.5 333 70.0
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.3e-127 460.7 331 71.0
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.6e-127 460.3 336 70.8
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.1e-127 459.9 424 59.9
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 3.7e-127 459.1 337 69.4
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 4.8e-127 458.8 402 60.7
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 6.2e-127 458.4 335 69.0
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 1.1e-126 457.6 371 64.7
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.4e-126 457.2 329 69.6
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.4e-126 457.2 397 61.7
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.8e-126 456.8 329 69.6
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.8e-126 456.8 332 68.1
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 2.4e-126 456.4 338 68.6
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 3.1e-126 456.1 369 64.5
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.1e-126 456.1 365 65.5
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 5.3e-126 455.3 334 68.6
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 6.9e-126 454.9 330 70.6
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.2e-125 454.1 345 68.4
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 1.2e-125 454.1 332 69.0
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.6e-125 453.0 350 65.7
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 4.5e-125 452.2 343 68.8
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 5.8e-125 451.8 355 66.5
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.0e-124 451.1 330 69.1
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 1.0e-124 451.1 415 60.0
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.3e-124 450.7 370 63.2
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.3e-124 450.7 355 65.9
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 8.4e-124 448.0 382 64.4
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.1e-123 447.6 331 68.6
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.1e-123 447.6 336 69.3
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.9e-123 446.8 382 64.4
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 2.5e-123 446.4 338 67.2
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 5.5e-123 445.3 330 67.0
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 7.1e-123 444.9 407 59.0
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 7.9e-122 441.4 294 75.5
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 1.3e-121 440.7 412 59.7
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.8e-121 440.3 334 67.7
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 3.9e-121 439.1 338 65.1
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 8.7e-121 438.0 346 66.5
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 8.7e-121 438.0 394 59.1
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 8.7e-121 438.0 344 64.8
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 1.5e-120 437.2 340 66.5
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 1.9e-120 436.8 341 66.6
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 4.3e-120 435.6 345 65.5
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 7.4e-120 434.9 334 65.3
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 7.4e-120 434.9 334 65.3
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 7.4e-120 434.9 342 65.5
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 9.7e-120 434.5 332 66.0
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 9.7e-120 434.5 332 66.0
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 6.3e-119 431.8 328 67.4
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.4e-118 430.6 352 63.1
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 3.1e-118 429.5 394 58.9
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 2.6e-117 426.4 331 64.7
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 4.5e-117 425.6 329 64.4
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 2.2e-116 423.3 338 65.1
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.8e-116 422.5 389 59.6
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 8.5e-116 421.4 459 53.2
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.9e-115 420.2 389 59.1
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 4.2e-115 419.1 344 63.1
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.2e-115 419.1 387 59.9
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 5.5e-115 418.7 340 63.2
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.2e-114 417.5 344 62.8
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 4.6e-114 415.6 344 62.8
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 4.6e-114 415.6 344 62.8
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 8.8e-113 411.4 344 61.6
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-112 410.2 335 62.1
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 9.7e-112 407.9 340 64.1
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 6.3e-111 405.2 389 58.4
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 6.3e-111 405.2 543 46.0
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 2.0e-109 400.2 394 56.6
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 2.5e-107 393.3 397 54.7
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 7.9e-106 388.3 401 54.6
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.8e-105 387.1 296 64.5
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 7.4e-104 381.7 401 53.1
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.1e-102 377.9 441 50.3
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 5.3e-102 375.6 470 49.6
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 2.6e-101 373.2 331 60.1
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 6.5e-100 368.6 283 64.7
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 6.5e-100 368.6 281 67.6
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 4.4e-96 355.9 217 77.4
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 5.7e-96 355.5 350 58.3
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 9.7e-96 354.8 257 67.7
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 6.3e-95 352.1 261 68.6
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 8.2e-95 351.7 215 79.1
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 3.5e-93 346.3 227 73.1
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 6.5e-92 342.0 290 62.4
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 3.0e-89 333.2 261 67.4
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 4.7e-82 309.3 215 70.2
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 1.2e-80 304.7 190 75.3
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.2e-80 304.7 548 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-78 297.0 253 59.3
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 5.4e-78 295.8 221 66.1
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.9e-77 292.4 213 69.0
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 8.6e-76 288.5 233 68.7
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 5.2e-73 279.3 234 65.8
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.2e-72 278.1 329 50.8
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 7.5e-72 275.4 288 56.6
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 4.4e-56 223.0 191 64.9
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.3e-39 168.3 256 36.7
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 3.8e-39 166.8 243 41.2
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 2.4e-30 137.5 288 34.4
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 4.0e-25 120.2 252 38.5
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 6.0e-21 106.3 188 42.0
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.1e-18 97.8 83 61.4
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 2.4e-17 94.4 129 45.7
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 4.0e-17 93.6 115 49.6
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.9e-14 84.7 104 46.2
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 2.5e-14 84.3 51 76.5
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.5e-14 84.3 72 58.3
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.5e-14 84.3 72 58.3
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 3.2e-14 84.0 189 29.6
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.5e-13 80.5 72 54.2
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.5e-13 80.5 72 54.2
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.5e-13 80.5 72 54.2
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 3.5e-13 80.5 249 26.5
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 7.9e-13 79.3 168 36.9
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.0e-12 79.0 72 52.8
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-12 78.6 72 52.8
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 3.3e-11 73.9 166 31.3
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 2.1e-10 71.2 48 72.9
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 1.4e-09 68.6 173 32.9
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.8e-09 68.2 156 34.0


User provided reference genes

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