Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.5e-217 757.7 393 100.0
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.1e-61 241.5 266 53.8
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 4.1e-61 239.6 270 51.1
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.0e-60 237.3 267 52.4
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.5e-60 236.5 260 53.8
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.0e-60 235.7 265 51.7
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 6.0e-60 235.7 275 52.0
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 3.0e-59 233.4 259 51.4
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 3.9e-59 233.0 257 51.8
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 8.6e-59 231.9 260 52.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.1e-58 231.5 266 51.9
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.1e-58 231.5 260 51.9
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.5e-58 231.1 266 50.4
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.5e-58 231.1 259 51.4
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.5e-58 230.3 259 51.7
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.5e-58 230.3 266 48.5
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.5e-58 230.3 266 50.0
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 5.6e-58 229.2 266 50.0
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.6e-58 229.2 266 49.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 5.6e-58 229.2 266 49.6
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 9.5e-58 228.4 287 46.3
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 9.5e-58 228.4 253 51.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-57 228.0 260 51.2
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.2e-57 228.0 275 48.7
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.6e-57 227.6 285 46.0
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.6e-57 227.6 285 46.0
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.6e-57 227.6 285 46.0
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.1e-57 227.3 260 50.4
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 2.1e-57 227.3 260 50.4
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.8e-57 226.9 269 50.6
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 3.6e-57 226.5 201 57.7
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.6e-57 226.5 266 51.1
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 6.2e-57 225.7 259 50.2
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 8.0e-57 225.3 189 64.6
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 1.1e-56 224.9 199 57.8
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.1e-56 224.9 275 48.4
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.4e-56 224.6 286 45.5
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.3e-56 223.8 266 48.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 2.3e-56 223.8 269 48.7
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.1e-56 223.4 282 45.4
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 3.1e-56 223.4 266 48.1
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 4.0e-56 223.0 270 49.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.0e-56 223.0 261 49.0
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 5.2e-56 222.6 266 48.1
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 8.9e-56 221.9 266 48.9
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-55 221.1 297 43.4
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.0e-55 220.7 266 48.9
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 4.4e-55 219.5 256 48.4
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 5.8e-55 219.2 199 58.3
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.8e-55 219.2 260 48.5
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 7.5e-55 218.8 293 47.1
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.3e-54 218.0 263 47.1
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.3e-54 218.0 260 48.1
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 2.9e-54 216.9 283 44.2
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 3.7e-54 216.5 294 45.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 3.7e-54 216.5 260 46.9
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 6.4e-54 215.7 205 56.1
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 8.3e-54 215.3 268 48.9
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 8.3e-54 215.3 260 47.7
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 8.3e-54 215.3 205 56.1
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 8.3e-54 215.3 266 47.7
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.1e-53 214.9 287 44.6
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.4e-53 213.8 256 47.7
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 4.1e-53 213.0 266 46.6
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 4.1e-53 213.0 264 47.0
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 5.4e-53 212.6 260 47.3
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 7.0e-53 212.2 266 47.4
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 7.0e-53 212.2 258 48.4
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.6e-52 211.1 258 50.0
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.8e-52 208.8 271 46.5
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 7.8e-52 208.8 266 47.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.0e-51 208.4 266 45.9
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.7e-51 207.6 244 48.4
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.7e-51 207.6 266 44.7
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 3.0e-51 206.8 266 47.4
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 2.5e-50 203.8 260 47.3
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.3e-50 203.4 258 48.8
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 3.6e-49 199.9 260 45.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.2e-49 199.1 261 46.4
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.8e-48 197.6 193 56.5
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.1e-48 196.8 334 39.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.1e-48 196.8 261 45.2
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.2e-48 196.1 258 48.4
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 6.8e-48 195.7 260 45.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 6.8e-48 195.7 266 44.7
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 6.8e-48 195.7 258 45.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 6.8e-48 195.7 183 55.7
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-47 194.9 205 54.1
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.5e-47 194.5 260 45.4
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-47 194.5 296 41.6
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.5e-47 194.5 267 44.2
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.6e-47 193.7 258 44.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 4.4e-47 193.0 303 43.6
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 7.5e-47 192.2 266 43.2
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 8.3e-46 188.7 176 53.4
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.4e-45 188.0 266 41.4
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.4e-45 188.0 266 41.4
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.4e-45 188.0 266 41.4
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.9e-45 187.6 266 41.4
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 1.9e-45 187.6 266 41.4
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 7.1e-45 185.7 265 41.5
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 7.1e-45 185.7 184 52.2
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.1e-44 184.1 258 41.1
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 6.0e-44 182.6 266 41.0
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 6.6e-43 179.1 143 65.0
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.1e-42 178.3 167 55.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.5e-42 177.2 182 51.1
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.5e-42 177.2 182 51.1
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 8.1e-41 172.2 268 40.3
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 5.2e-40 169.5 142 64.1
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.2e-39 168.3 267 39.0
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.3e-38 164.9 238 41.6
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.9e-38 163.7 142 59.2
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 8.4e-38 162.2 193 44.6
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.4e-37 159.5 162 49.4
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.7e-36 157.1 267 39.3
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.7e-36 157.1 186 45.2
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 7.8e-36 155.6 210 43.8
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.9e-34 151.0 184 44.6
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-33 148.3 175 44.0
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-29 134.8 143 51.7
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.8e-24 117.9 108 53.7
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.1e-24 117.1 145 43.4
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.8e-22 110.2 100 57.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 4.9e-22 109.8 91 65.9
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 9.3e-21 105.5 178 38.2
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 2.1e-20 104.4 85 64.7
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 3.5e-20 103.6 187 34.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.6e-15 87.4 186 31.2
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 7.4e-10 69.3 124 37.1


User provided reference genes

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