Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 2064.3 1048 100.0
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1397.1 975 73.5
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1395.9 993 73.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1384.0 989 72.7
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1344.7 981 72.0
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1339.3 979 70.3
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1338.9 977 70.1
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1327.0 996 70.0
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1325.8 989 68.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1322.4 977 69.1
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 980 69.0
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 985 68.7
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 1003 69.3
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 979 69.5
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 980 68.7
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 984 69.1
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1315.1 977 69.3
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1308.9 993 68.1
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1307.4 985 69.0
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1306.2 978 68.9
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1305.4 982 68.2
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1303.9 976 69.1
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1301.6 989 67.9
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1301.2 987 67.5
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1298.1 973 68.1
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1298.1 983 68.2
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1295.0 976 68.3
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1292.3 988 67.9
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1292.3 984 68.3
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1291.6 981 68.0
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1290.0 985 66.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1290.0 989 67.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1290.0 982 67.8
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1286.2 982 68.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1286.2 985 66.2
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1285.0 985 66.1
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1284.2 977 68.3
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1283.5 985 68.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1283.1 984 67.2
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 983 68.2
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 979 67.8
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1280.0 987 66.5
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1280.0 976 68.4
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1279.6 974 67.8
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1278.8 993 67.6
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1277.3 976 67.5
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1275.8 978 67.4
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1275.4 984 68.0
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1275.0 982 67.9
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1271.1 983 67.5
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1270.8 983 66.9
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1270.4 984 67.6
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1270.0 1012 64.4
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1269.6 982 67.4
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1267.7 977 67.0
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1266.9 984 67.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1266.5 981 65.5
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1266.1 1012 64.3
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1266.1 1005 65.4
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1265.4 984 67.9
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1265.0 934 68.8
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1264.6 998 66.4
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1264.2 984 67.8
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1264.2 975 67.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1264.2 939 70.3
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1263.8 984 67.8
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1263.8 1023 64.2
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1263.8 1015 65.5
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1263.4 984 67.8
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1261.9 984 67.4
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1256.5 987 66.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1255.0 987 66.9
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1254.2 981 66.7
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1250.7 977 67.0
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1248.0 951 67.8
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1237.6 947 68.1
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1236.1 1076 62.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1232.6 984 65.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1223.0 989 64.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1222.2 1030 61.8
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1220.7 975 65.2
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1209.9 987 64.0
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1198.3 973 65.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1193.7 974 64.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1186.0 1076 60.2
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1178.7 951 65.6
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1175.6 975 63.2
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1174.8 974 63.8
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1174.5 985 62.6
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1173.3 972 64.2
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1172.9 980 61.8
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1161.0 975 62.3
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1155.2 977 62.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1153.7 982 61.0
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1146.7 980 61.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1146.0 1023 61.4
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1143.6 995 61.0
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1140.9 976 61.9
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1136.7 994 61.0
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1130.2 987 59.8
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1124.4 978 60.5
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1122.1 928 63.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1121.3 981 60.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1119.8 980 59.5
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1118.6 1007 59.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1115.5 1003 58.5
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1114.4 945 61.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1112.4 1109 54.5
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1106.3 1019 59.0
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1104.7 913 63.7
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1103.2 868 66.7
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1095.9 907 64.6
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1093.2 974 61.1
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1092.8 1142 52.9
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1083.6 993 59.8
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 2.6e-304 1048.9 976 57.3
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.0e-296 1022.7 953 58.7
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 3.4e-296 1021.9 982 56.3
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.3e-292 1010.0 871 60.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 9.0e-289 997.3 953 58.6
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 1.1e-278 963.8 830 62.2
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 8.2e-274 947.6 886 57.7
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.0e-259 899.8 1001 50.0
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.2e-256 890.6 999 50.3
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.5e-248 862.1 790 61.1
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 9.8e-235 817.8 951 48.2
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.6e-229 799.3 994 46.3
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.5e-224 782.7 988 44.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.3e-223 780.8 638 64.7
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.3e-218 764.2 643 63.9
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 3.7e-210 736.1 656 60.2
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 1.2e-208 731.1 1184 40.4
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.5e-208 729.6 845 46.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 8.9e-204 714.9 637 60.3
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 6.3e-157 559.3 558 55.7
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 1.2e-155 555.1 372 76.1
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 2.9e-154 550.4 307 85.7
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 3.5e-139 500.4 449 64.1
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-137 495.4 466 61.4
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.8e-135 488.0 384 66.7
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-123 448.4 544 47.1
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.1e-96 358.2 238 74.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-95 355.5 250 71.6
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.2e-93 348.2 261 68.6
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-83 315.5 240 68.8
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.3e-82 311.6 814 31.0
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.8e-79 302.0 163 84.0
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-71 275.4 255 60.8
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.5e-54 219.2 120 83.3
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.5e-53 213.8 108 89.8
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.1e-47 196.4 451 33.5
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.3e-45 189.5 215 47.0
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.5e-45 187.2 234 53.4
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 6.1e-43 180.6 152 68.4
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 3.0e-42 178.3 237 50.6
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.5e-41 175.3 90 85.6
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 4.5e-38 164.5 134 59.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.1e-33 149.8 204 45.1
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.6e-30 138.7 72 81.9
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.3e-29 136.3 103 68.0
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 4.7e-27 127.9 72 76.4
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 2.0e-22 112.5 83 72.3
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.0e-21 110.2 90 65.6
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.2e-21 109.0 96 55.2
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 9.4e-20 103.6 129 49.6
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.8e-18 99.4 98 56.1
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.8e-18 99.4 98 56.1
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 5.2e-18 97.8 82 63.4
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 7.2e-12 77.4 104 45.2
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.2e-11 76.6 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.6e-11 75.1 50 68.0
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.3e-10 72.4 35 85.7
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 6.8e-10 70.9 82 52.4
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.0e-09 69.3 65 50.8
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 3.7e-08 65.1 146 30.8


User provided reference genes

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