Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 5.9e-65 250.8 130 100.0
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 3.6e-46 188.3 129 76.0
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 8.0e-46 187.2 128 76.6
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 8.0e-46 187.2 128 76.6
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 1.8e-45 186.0 129 75.2
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 3.1e-45 185.3 129 72.9
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 4.0e-45 184.9 129 75.2
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 4.0e-45 184.9 127 75.6
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 6.8e-45 184.1 130 74.6
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 6.8e-45 184.1 130 75.4
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 8.9e-45 183.7 130 76.2
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.5e-44 183.0 129 73.6
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 2.0e-44 182.6 128 75.0
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.0e-44 182.6 129 73.6
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 3.4e-44 181.8 130 73.8
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 5.8e-44 181.0 130 73.8
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 5.8e-44 181.0 129 74.4
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 5.8e-44 181.0 129 74.4
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 7.5e-44 180.6 127 73.2
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 9.8e-44 180.3 124 75.8
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 9.8e-44 180.3 130 73.1
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 9.8e-44 180.3 130 73.1
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 9.8e-44 180.3 130 73.1
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 9.8e-44 180.3 130 73.1
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 9.8e-44 180.3 129 75.2
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 9.8e-44 180.3 130 76.2
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.3e-43 179.9 127 74.0
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 2.2e-43 179.1 127 74.0
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.2e-43 179.1 129 73.6
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 2.2e-43 179.1 126 73.0
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 2.9e-43 178.7 130 72.3
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 2.9e-43 178.7 130 74.6
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 2.9e-43 178.7 130 73.8
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 2.9e-43 178.7 129 72.9
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 2.9e-43 178.7 128 75.0
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 3.7e-43 178.3 126 75.4
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 3.7e-43 178.3 123 74.8
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 3.7e-43 178.3 133 75.9
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 3.7e-43 178.3 127 74.8
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.7e-43 178.3 130 75.4
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 3.7e-43 178.3 124 76.6
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 3.7e-43 178.3 129 72.1
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 4.9e-43 177.9 129 72.9
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.9e-43 177.9 130 74.6
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.9e-43 177.9 130 74.6
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 4.9e-43 177.9 129 74.4
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 6.4e-43 177.6 129 75.2
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 6.4e-43 177.6 124 75.8
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 6.4e-43 177.6 124 75.8
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 8.3e-43 177.2 124 76.6
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 8.3e-43 177.2 129 71.3
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 8.3e-43 177.2 129 73.6
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 8.3e-43 177.2 129 71.3
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.3e-43 177.2 130 74.6
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 1.1e-42 176.8 129 71.3
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 1.1e-42 176.8 126 73.8
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.1e-42 176.8 130 73.8
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 1.1e-42 176.8 123 75.6
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.4e-42 176.4 130 73.8
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.4e-42 176.4 130 73.8
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.4e-42 176.4 127 73.2
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.4e-42 176.4 132 72.0
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 1.4e-42 176.4 132 72.0
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 1.4e-42 176.4 128 75.8
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 1.9e-42 176.0 127 73.2
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 1.9e-42 176.0 131 75.6
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.9e-42 176.0 130 73.8
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.4e-42 175.6 129 72.9
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 2.4e-42 175.6 134 70.9
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 3.2e-42 175.3 124 75.8
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 3.2e-42 175.3 129 72.1
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 3.2e-42 175.3 126 76.2
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 4.1e-42 174.9 129 70.5
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 4.1e-42 174.9 129 72.1
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 5.4e-42 174.5 127 72.4
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 5.4e-42 174.5 130 72.3
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 5.4e-42 174.5 129 71.3
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 7.0e-42 174.1 129 72.1
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 7.0e-42 174.1 129 70.5
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 9.2e-42 173.7 123 73.2
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 9.2e-42 173.7 123 75.6
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 1.2e-41 173.3 130 72.3
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 1.2e-41 173.3 130 72.3
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 1.2e-41 173.3 130 72.3
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 1.2e-41 173.3 130 72.3
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.2e-41 173.3 127 71.7
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.2e-41 173.3 132 71.2
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.2e-41 173.3 123 74.0
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 1.2e-41 173.3 129 72.1
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 1.2e-41 173.3 123 74.0
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 1.6e-41 172.9 129 71.3
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.6e-41 172.9 129 71.3
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.6e-41 172.9 128 73.4
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 2.0e-41 172.6 124 75.0
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 2.0e-41 172.6 130 71.5
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 2.7e-41 172.2 130 74.6
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.7e-41 172.2 130 71.5
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 3.5e-41 171.8 123 74.8
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 3.5e-41 171.8 130 69.2
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 4.6e-41 171.4 123 72.4
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 6.0e-41 171.0 124 75.8
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 1.0e-40 170.2 129 71.3
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 1.0e-40 170.2 128 68.8
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.3e-40 169.9 123 74.8
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.3e-40 169.9 123 74.8
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.3e-40 169.9 124 75.0
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 1.3e-40 169.9 124 75.0
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 2.3e-40 169.1 124 75.0
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 2.3e-40 169.1 126 72.2
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 3.9e-40 168.3 124 73.4
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 3.9e-40 168.3 123 74.8
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 3.9e-40 168.3 131 69.5
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.9e-40 168.3 131 70.2
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 6.6e-40 167.5 126 70.6
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 8.6e-40 167.2 123 73.2
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.9e-39 166.0 122 71.3
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.9e-39 166.0 122 73.0
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 2.5e-39 165.6 131 71.8
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 4.3e-39 164.9 123 73.2
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 7.3e-39 164.1 134 67.9
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.6e-38 162.9 130 69.2
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.6e-38 162.9 122 72.1
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 2.1e-38 162.5 128 69.5
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.1e-38 162.5 130 68.5
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.8e-38 162.2 130 71.5
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 4.7e-38 161.4 105 81.0
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 4.7e-38 161.4 130 67.7
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 1.4e-37 159.8 117 75.2
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 3.1e-37 158.7 102 81.4
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.2e-36 156.8 121 70.2
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 3.4e-36 155.2 96 84.4
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 1.3e-35 153.3 127 62.2
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 1.3e-35 153.3 126 64.3
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 2.1e-33 146.0 125 63.2
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 9.5e-31 137.1 124 62.1
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.6e-30 135.2 117 63.2
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.2e-28 130.2 128 60.9
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.0e-28 129.4 128 60.2
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.7e-24 116.3 108 58.3
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 4.3e-23 111.7 70 81.4
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 7.1e-18 94.4 106 50.0
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 3.6e-14 82.0 67 62.7
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 2.9e-11 72.4 47 78.7
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 7.8e-09 64.3 94 41.5
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 2.3e-08 62.8 86 43.0


User provided reference genes

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