Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G387 Amborella trichopoda HOM05D001739 ORTHO05D004575 5.3e-134 481.1 254 100.0
ATR0681G226 Amborella trichopoda HOM05D001739 ORTHO05D004575 5.7e-96 354.8 315 66.3
Rhsim05G0003800 Rhododendron simsii HOM05D001739 ORTHO05D004575 4.7e-50 202.2 311 43.7
SGA_v2.0_scaffold281G46906 Striga asiatica HOM05D001739 ORTHO05D004575 8.9e-49 198.0 292 45.2
Dinv25554 Davidia involucrata HOM05D001739 ORTHO05D004575 2.0e-48 196.8 306 44.1
TAR383G0739 Trochodendron aralioides HOM05D001739 ORTHO05D004575 9.8e-48 194.5 312 43.6
vmacro17113 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.2e-47 193.4 311 43.4
Cc06_g12580 Coffea canephora HOM05D001739 ORTHO05D004575 2.9e-47 193.0 316 42.7
Eucgr.C00777 Eucalyptus grandis HOM05D001739 ORTHO05D004575 2.9e-47 193.0 311 42.4
Ah.09g229240 Amaranthus hybridus HOM05D001739 ORTHO05D004575 6.4e-47 191.8 304 42.4
Sabra18G0055900 Salix brachista HOM05D001739 ORTHO05D004575 8.3e-47 191.4 308 42.9
vmacro23083 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.1e-46 191.0 266 48.5
Duzib168G0208 Durio zibethinus HOM05D001739 ORTHO05D004575 7.0e-46 188.3 304 42.8
Prupe.7G193800 Prunus persica HOM05D001739 ORTHO05D004575 9.2e-46 188.0 308 43.5
vmacro17095 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.2e-45 187.6 311 41.8
Hma1.2p1_0169F.1_g074380 Hydrangea macrophylla HOM05D001739 ORTHO05D004575 2.7e-45 186.4 310 42.3
THA.LOC104809049 Tarenaya hassleriana HOM05D001739 ORTHO05D004575 2.7e-45 186.4 306 41.5
vmacro17096 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.7e-45 186.4 317 42.6
vmacro23084 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.7e-45 186.4 311 41.2
GSVIVG01023097001 Vitis vinifera HOM05D001739 ORTHO05D004575 3.5e-45 186.0 308 41.2
Lj4g0016027 Lotus japonicus HOM05D001739 ORTHO05D004575 7.8e-45 184.9 310 40.6
QL11p002157 Quercus lobata HOM05D001739 ORTHO05D004575 7.8e-45 184.9 309 43.4
Potri.006G137900 Populus trichocarpa HOM05D001739 ORTHO05D004575 1.0e-44 184.5 310 43.5
Glyma.13G112900 Glycine max HOM05D001739 ORTHO05D004575 1.3e-44 184.1 306 40.5
Gohir.A07G016500 Gossypium hirsutum HOM05D001739 ORTHO05D004575 1.3e-44 184.1 304 43.4
Lj7C690T11 Lonicera japonica HOM05D001739 ORTHO05D004575 2.3e-44 183.3 303 39.6
Glyma.17G046900 Glycine max HOM05D001739 ORTHO05D004575 3.0e-44 183.0 306 40.5
TWI32G0648 Tripterygium wilfordii HOM05D001739 ORTHO05D004575 5.0e-44 182.2 297 41.1
Phvul.003G128600 Phaseolus vulgaris HOM05D001739 ORTHO05D004575 6.6e-44 181.8 302 41.1
VMungo1215G0229 Vigna mungo HOM05D001739 ORTHO05D004575 6.6e-44 181.8 306 41.2
Thecc.09G071800 Theobroma cacao HOM05D001739 ORTHO05D004575 8.6e-44 181.4 307 43.3
unitig_744.g24652 Utricularia gibba HOM05D001739 ORTHO05D004575 8.6e-44 181.4 262 45.0
Ca_09790_v3 Cicer arietinum L. HOM05D001739 ORTHO05D004575 1.5e-43 180.6 300 40.0
MSTRG.5982 Avicennia marina HOM05D001739 ORTHO05D004575 1.9e-43 180.3 312 42.0
FAN23G1590 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.5e-43 179.9 311 42.8
COL.COLO4_21223 Corchorus olitorius HOM05D001739 ORTHO05D004575 3.3e-43 179.5 304 43.1
Gorai.001G017100 Gossypium raimondii HOM05D001739 ORTHO05D004575 3.3e-43 179.5 304 42.1
CANSAT56G3462 Cannabis sativa HOM05D001739 ORTHO05D004575 4.3e-43 179.1 315 41.3
MD02G1099100 Malus domestica HOM05D001739 ORTHO05D004575 4.3e-43 179.1 309 41.7
MD15G1221900 Malus domestica HOM05D001739 ORTHO05D004575 4.3e-43 179.1 306 42.8
Atru.chr7.1751 Acer truncatum HOM05D001739 ORTHO05D004575 5.6e-43 178.7 307 40.7
PSO421G0331 Papaver somniferum HOM05D001739 ORTHO05D004575 7.3e-43 178.3 311 40.2
Gohir.D07G016300 Gossypium hirsutum HOM05D001739 ORTHO05D004575 2.1e-42 176.8 304 42.8
Psat7g002920 Pisum sativum HOM05D001739 ORTHO05D004575 2.1e-42 176.8 263 42.6
Prupe.6G204300 Prunus persica HOM05D001739 ORTHO05D004575 2.1e-42 176.8 306 42.5
A03p19100 Brassica napus HOM05D001739 ORTHO05D004575 2.8e-42 176.4 307 38.8
Peaxi162Scf00191g01112 Petunia axillaris HOM05D001739 ORTHO05D004575 2.8e-42 176.4 312 40.7
Aa31LG9G14080 Aethionema arabicum HOM05D001739 ORTHO05D004575 4.7e-42 175.6 306 39.2
BraA03t11167Z Brassica rapa HOM05D001739 ORTHO05D004575 4.7e-42 175.6 307 38.8
Nn8g40294 Nelumbo nucifera HOM05D001739 ORTHO05D004575 6.2e-42 175.3 310 40.0
BcaB01g03896 Brassica carinata HOM05D001739 ORTHO05D004575 8.1e-42 174.9 307 39.1
Cpa.g.sc32.6 Carica papaya HOM05D001739 ORTHO05D004575 8.1e-42 174.9 305 43.0
DCAR_003861 Daucus carota HOM05D001739 ORTHO05D004575 8.1e-42 174.9 306 40.2
FvH4_1g09210 Fragaria vesca HOM05D001739 ORTHO05D004575 8.1e-42 174.9 309 41.1
Lalb_Chr12g0200311 Lupinus albus HOM05D001739 ORTHO05D004575 8.1e-42 174.9 303 39.3
PSO104G0064 Papaver somniferum HOM05D001739 ORTHO05D004575 8.1e-42 174.9 291 40.9
RcHm_v2.0_Chr2g0095731 Rosa chinensis HOM05D001739 ORTHO05D004575 8.1e-42 174.9 312 41.3
C03p22320 Brassica napus HOM05D001739 ORTHO05D004575 1.1e-41 174.5 308 39.0
Cfa002954 Carpinus fangiana HOM05D001739 ORTHO05D004575 1.1e-41 174.5 308 42.5
FAN19G0975 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.1e-41 174.5 309 41.1
arahy.Tifrunner.gnm1.ann1.9HZQ4R Arachis hypogaea HOM05D001739 ORTHO05D004575 1.4e-41 174.1 299 39.1
Aqoxy7G03292 Aquilegia oxysepala HOM05D001739 ORTHO05D004575 1.8e-41 173.7 299 41.1
AT2G34357 Arabidopsis thaliana HOM05D001739 ORTHO05D004575 1.8e-41 173.7 307 38.8
BcaC01g05798 Brassica carinata HOM05D001739 ORTHO05D004575 1.8e-41 173.7 308 39.0
BolC3t14614H Brassica oleracea HOM05D001739 ORTHO05D004575 1.8e-41 173.7 308 39.0
BolC4t23047H Brassica oleracea HOM05D001739 ORTHO05D004575 1.8e-41 173.7 302 38.7
ECA240G3214 Erigeron canadensis HOM05D001739 ORTHO05D004575 1.8e-41 173.7 299 41.8
CiPaw.03G202600 Carya illinoinensis HOM05D001739 ORTHO05D004575 2.3e-41 173.3 307 42.0
DCAR_005064 Daucus carota HOM05D001739 ORTHO05D004575 2.3e-41 173.3 307 39.4
A05p11320 Brassica napus HOM05D001739 ORTHO05D004575 3.1e-41 172.9 302 38.7
C04p14660 Brassica napus HOM05D001739 ORTHO05D004575 3.1e-41 172.9 302 38.7
Haze_26051 Corylus avellana HOM05D001739 ORTHO05D004575 4.0e-41 172.6 308 42.2
arahy.Tifrunner.gnm1.ann1.SDZ4E8 Arachis hypogaea HOM05D001739 ORTHO05D004575 5.2e-41 172.2 299 39.1
EL10Ac8g19018 Beta vulgaris HOM05D001739 ORTHO05D004575 5.2e-41 172.2 305 41.6
BcaB02g09558 Brassica carinata HOM05D001739 ORTHO05D004575 5.2e-41 172.2 302 39.7
Thhalv10016153m.g Eutrema salsugineum HOM05D001739 ORTHO05D004575 5.2e-41 172.2 308 38.3
FAN26G0091 Fragaria x ananassa HOM05D001739 ORTHO05D004575 5.2e-41 172.2 312 41.7
FAN26G1120 Fragaria x ananassa HOM05D001739 ORTHO05D004575 5.2e-41 172.2 312 41.7
Psat6g134600 Pisum sativum HOM05D001739 ORTHO05D004575 5.2e-41 172.2 311 38.9
CAN.G63.12 Capsicum annuum HOM05D001739 ORTHO05D004575 6.8e-41 171.8 306 41.5
FAN28G0236 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.5e-40 170.6 312 40.7
FAN28G1182 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.5e-40 170.6 312 40.7
AL4G30320 Arabidopsis lyrata HOM05D001739 ORTHO05D004575 2.6e-40 169.9 307 38.1
Manes.16G091500 Manihot esculenta HOM05D001739 ORTHO05D004575 2.6e-40 169.9 311 38.9
Prupe.6G204500 Prunus persica HOM05D001739 ORTHO05D004575 2.6e-40 169.9 282 42.6
Nitab4.5_0001565g0110 Nicotiana tabacum HOM05D001739 ORTHO05D004575 4.4e-40 169.1 306 41.2
Sc18g0003470 Simmondsia chinensis HOM05D001739 ORTHO05D004575 4.4e-40 169.1 305 39.3
Sp4g16630 Schrenkiella parvula HOM05D001739 ORTHO05D004575 5.8e-40 168.7 308 38.6
HPP92_004359 Vanilla planifolia HOM05D001739 ORTHO05D004575 9.8e-40 167.9 288 43.8
CARHR128440 Cardamine hirsuta HOM05D001739 ORTHO05D004575 2.2e-39 166.8 307 37.5
Ciclev10023308m.g Citrus clementina HOM05D001739 ORTHO05D004575 2.2e-39 166.8 294 41.2
Solyc07g042380.4 Solanum lycopersicum HOM05D001739 ORTHO05D004575 2.2e-39 166.8 294 40.8
MELO3C015548.2 Cucumis melo HOM05D001739 ORTHO05D004575 2.9e-39 166.4 316 38.9
AUR62025277 Chenopodium quinoa HOM05D001739 ORTHO05D004575 4.9e-39 165.6 256 42.6
TPR.G18558 Trifolium pratense HOM05D001739 ORTHO05D004575 1.1e-38 164.5 305 38.4
Sc24g0001530 Simmondsia chinensis HOM05D001739 ORTHO05D004575 1.4e-38 164.1 305 40.3
PGR142G3865 Punica granatum HOM05D001739 ORTHO05D004575 1.9e-38 163.7 316 38.3
Sopen07g021980 Solanum pennellii HOM05D001739 ORTHO05D004575 2.4e-38 163.3 307 39.4
Medtr1g072890 Medicago truncatula HOM05D001739 ORTHO05D004575 3.2e-38 162.9 303 37.6
Sed0004150 Sechium edule HOM05D001739 ORTHO05D004575 3.2e-38 162.9 307 38.8
Sed0021617 Sechium edule HOM05D001739 ORTHO05D004575 3.2e-38 162.9 313 37.4
ClCG03G014800 Citrullus lanatus HOM05D001739 ORTHO05D004575 4.1e-38 162.5 312 38.1
CsaV3_1G041350 Cucumis sativus L. HOM05D001739 ORTHO05D004575 4.1e-38 162.5 316 38.3
Lsat_1_v5_gn_7_35381 Lactuca sativa HOM05D001739 ORTHO05D004575 7.1e-38 161.8 298 39.3
Os02g0782100 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D004575 1.2e-37 161.0 297 36.0
arahy.Tifrunner.gnm1.ann1.WW7XLJ Arachis hypogaea HOM05D001739 ORTHO05D004575 1.6e-37 160.6 294 38.4
AUR62028281 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.6e-37 160.6 270 41.5
Hund23253 Selenicereus undatus HOM05D001739 ORTHO05D004575 1.6e-37 160.6 299 38.5
Carub.0004s1602 Capsella rubella HOM05D001739 ORTHO05D004575 2.1e-37 160.2 308 37.3
SEGI_25708 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 2.1e-37 160.2 290 37.9
Zm00001eb257110 Zea mays HOM05D001739 ORTHO05D004575 2.1e-37 160.2 295 38.0
HanXRQChr09g0273551 Helianthus annuus HOM05D001739 ORTHO05D004575 3.5e-37 159.5 289 40.1
Medtr1g072970 Medicago truncatula HOM05D001739 ORTHO05D004575 6.0e-37 158.7 314 36.0
arahy.Tifrunner.gnm1.ann1.7457H2 Arachis hypogaea HOM05D001739 ORTHO05D004575 7.8e-37 158.3 294 37.8
CSS0017458 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D004575 7.8e-37 158.3 305 38.0
TPR.G34376 Trifolium pratense HOM05D001739 ORTHO05D004575 1.0e-36 157.9 297 38.0
Migut.J00896 Erythranthe guttata HOM05D001739 ORTHO05D004575 8.6e-36 154.8 309 35.6
BcaC02g11606 Brassica carinata HOM05D001739 ORTHO05D004575 1.1e-35 154.5 284 37.3
C04p13350 Brassica napus HOM05D001739 ORTHO05D004575 1.1e-35 154.5 279 38.0
BcaC02g11500 Brassica carinata HOM05D001739 ORTHO05D004575 2.5e-35 153.3 296 36.8
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 5.6e-35 152.1 270 42.6
CDE04G0230 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 7.3e-35 151.8 306 38.6
arahy.Tifrunner.gnm1.ann1.S2P6Y8 Arachis hypogaea HOM05D001739 ORTHO05D004575 2.8e-34 149.8 282 39.0
AUR62019633 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.1e-33 147.9 271 40.2
AUR62039592 Chenopodium quinoa HOM05D001739 ORTHO05D004575 3.4e-32 142.9 258 39.5
Pp3c2_3190 Physcomitrium patens HOM05D001739 ORTHO05D004575 3.8e-31 139.4 315 35.2
HanXRQChr04g0122381 Helianthus annuus HOM05D001739 ORTHO05D004575 1.0e-28 131.3 257 35.8
SMO361G0459 Selaginella moellendorffii HOM05D001739 ORTHO05D004575 2.1e-26 123.6 298 33.6
CAN.G333.13 Capsicum annuum HOM05D001739 ORTHO05D004575 8.1e-26 121.7 195 46.2
Dinv30816 Davidia involucrata HOM05D001739 ORTHO05D004575 1.1e-22 111.3 280 33.9
Oeu055335.1 Olea europaea HOM05D001739 ORTHO05D004575 2.4e-22 110.2 160 43.1
SHI02769 Sapria himalayana HOM05D001739 ORTHO05D004575 7.1e-22 108.6 236 36.4
CDE12G0121 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 9.3e-22 108.2 229 37.1
Mapoly0061s0020 Marchantia polymorpha HOM05D001739 ORTHO05D004575 8.1e-18 95.1 319 31.0
CBR_g11184 Chara braunii HOM05D001739 ORTHO05D004575 3.1e-17 93.2 175 37.1
BraA05t20081Z Brassica rapa HOM05D001739 ORTHO05D004575 3.6e-10 69.7 148 33.1
arahy.Tifrunner.gnm1.ann1.704H70 Arachis hypogaea HOM05D001739 ORTHO05D004575 5.3e-09 65.9 118 39.0
Dinv25520 Davidia involucrata HOM05D001739 ORTHO05D004575 2.0e-08 63.9 42 64.3
vmacro17115 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.2e-07 60.5 42 66.7
Prupe.7G186700 Prunus persica HOM05D001739 ORTHO05D004575 3.8e-07 59.7 40 67.5
Lalb_Chr13g0299281 Lupinus albus HOM05D001739 ORTHO05D004575 6.4e-07 58.9 42 64.3
Cre19.g751197 Chlamydomonas reinhardtii HOM05D001739 ORTHO05D004575 5.5e-06 55.8 82 37.8
HanXRQChr10g0281301 Helianthus annuus HOM05D001739 ORTHO05D004575 5.5e-06 55.8 107 38.3


User provided reference genes

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