Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 1.6e-310 1068.5 517 100.0
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.1e-234 814.7 521 75.8
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 3.5e-233 811.6 530 75.5
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 2.3e-229 798.9 519 74.4
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 6.7e-229 797.3 517 74.1
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 8.8e-229 797.0 519 73.6
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 4.4e-228 794.7 519 74.2
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 1.8e-226 789.3 521 73.9
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 2.4e-226 788.9 519 73.2
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 1.6e-225 786.2 524 73.7
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 2.0e-225 785.8 519 74.4
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 2.7e-225 785.4 524 73.9
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 3.5e-225 785.0 519 73.0
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 1.7e-224 782.7 519 73.2
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.7e-224 782.7 519 72.6
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 2.9e-224 781.9 519 72.6
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 6.5e-224 780.8 520 71.9
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-223 780.0 521 72.6
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.1e-223 780.0 520 72.9
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 1.9e-223 779.2 521 71.6
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 1.9e-223 779.2 518 73.0
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.5e-223 778.9 520 72.7
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 3.2e-223 778.5 547 69.7
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 3.2e-223 778.5 522 71.1
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.2e-223 778.5 517 72.5
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 4.2e-223 778.1 514 73.0
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.5e-223 777.7 517 72.5
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 7.2e-223 777.3 519 72.1
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 9.4e-223 776.9 521 71.4
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 9.4e-223 776.9 519 72.3
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.2e-222 776.5 519 72.3
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 2.1e-222 775.8 519 71.9
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.7e-222 775.4 515 73.6
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 4.7e-222 774.6 520 71.2
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 4.7e-222 774.6 519 72.1
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 4.7e-222 774.6 521 71.2
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 6.1e-222 774.2 523 71.1
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 8.0e-222 773.9 521 71.4
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.0e-221 773.5 519 71.9
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.4e-221 773.1 515 73.2
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.3e-221 772.3 519 72.4
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 5.2e-221 771.2 516 70.9
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.2e-221 771.2 529 71.1
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.8e-221 770.8 521 72.2
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 6.8e-221 770.8 520 71.7
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.2e-220 770.0 526 71.9
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.2e-220 770.0 519 71.3
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.5e-220 769.6 520 71.5
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.5e-220 769.6 519 72.3
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.5e-220 769.6 519 72.1
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.0e-220 769.2 526 71.7
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 2.0e-220 769.2 467 78.8
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 4.4e-220 768.1 519 71.1
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 9.8e-220 766.9 520 71.0
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.3e-219 766.5 520 71.3
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.2e-219 765.8 519 72.1
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.2e-219 765.8 519 70.5
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 2.8e-219 765.4 520 70.4
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 2.8e-219 765.4 520 70.6
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 2.8e-219 765.4 520 70.6
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.8e-219 765.4 542 69.0
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 2.8e-219 765.4 516 71.1
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 3.7e-219 765.0 518 70.8
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.7e-219 765.0 526 71.1
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 6.3e-219 764.2 517 71.4
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 6.3e-219 764.2 517 71.4
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 6.3e-219 764.2 519 71.5
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 8.3e-219 763.8 520 70.4
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 1.1e-218 763.5 520 71.2
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-218 763.1 520 69.8
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 1.4e-218 763.1 519 71.3
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 2.4e-218 762.3 520 70.4
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 3.1e-218 761.9 518 71.4
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 4.1e-218 761.5 520 70.0
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 4.1e-218 761.5 519 71.3
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 5.4e-218 761.1 522 70.9
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 5.4e-218 761.1 519 70.3
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 7.0e-218 760.8 519 70.1
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 7.0e-218 760.8 520 71.5
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 9.1e-218 760.4 519 70.3
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 1.2e-217 760.0 518 70.7
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 1.2e-217 760.0 518 70.7
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 1.2e-217 760.0 520 71.3
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.6e-217 759.6 526 70.9
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.6e-217 759.6 524 70.2
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.6e-217 759.6 520 72.1
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 2.7e-217 758.8 518 71.0
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 2.7e-217 758.8 518 70.5
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.7e-217 758.8 521 69.5
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 3.5e-217 758.4 518 70.5
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 5.9e-217 757.7 516 70.7
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.7e-217 757.3 486 75.1
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.3e-216 756.5 553 68.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.2e-216 755.7 520 71.0
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 3.8e-216 755.0 521 70.6
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.5e-215 753.1 473 76.3
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 1.9e-215 752.7 524 69.1
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 1.9e-215 752.7 522 70.5
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 2.5e-215 752.3 518 71.4
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 9.5e-215 750.4 520 69.6
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.2e-214 750.0 516 69.8
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 2.6e-212 742.3 520 69.2
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 9.8e-212 740.3 532 68.4
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 1.1e-210 736.9 495 71.7
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 5.4e-210 734.6 525 68.2
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 7.8e-209 730.7 520 68.7
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 2.9e-208 728.8 520 67.7
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 1.1e-207 726.9 512 69.7
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 1.5e-207 726.5 512 70.1
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 2.5e-207 725.7 465 75.3
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 5.6e-207 724.5 470 73.4
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 9.5e-207 723.8 518 69.1
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 4.7e-206 721.5 519 68.4
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 3.0e-205 718.8 520 67.1
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 6.8e-205 717.6 521 68.5
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 2.0e-204 716.1 467 72.4
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 4.4e-204 714.9 492 70.5
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.4e-204 714.9 518 68.3
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.2e-203 712.6 519 68.6
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 3.7e-203 711.8 467 73.9
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 1.1e-202 710.3 522 66.3
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.4e-202 709.9 514 67.9
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.2e-202 708.8 521 67.6
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 5.4e-202 708.0 519 67.8
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 7.0e-202 707.6 521 66.2
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 9.2e-202 707.2 554 64.1
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 1.2e-201 706.8 503 69.2
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.5e-201 705.3 507 68.6
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 3.5e-201 705.3 467 73.4
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 3.0e-200 702.2 523 66.0
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 2.5e-199 699.1 523 65.8
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 2.8e-198 695.7 551 64.4
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 4.6e-193 678.3 576 60.2
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.0e-192 677.2 517 66.0
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 3.0e-192 675.6 519 64.5
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 1.1e-191 673.7 519 64.7
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 3.3e-191 672.2 557 61.8
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 1.4e-186 656.8 541 61.0
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 9.9e-180 634.0 523 60.4
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 3.2e-178 629.0 519 61.3
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.1e-173 614.0 369 79.1
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 9.0e-173 610.9 466 63.9
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 5.8e-172 608.2 495 63.2
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 4.9e-171 605.1 371 77.4
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 2.4e-170 602.8 446 63.9
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 3.1e-165 585.9 475 61.3
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 5.3e-165 585.1 473 60.9
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 3.9e-160 568.9 382 71.2
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 1.5e-156 557.0 467 58.7
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.1e-154 550.8 474 59.1
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 6.2e-150 535.0 562 52.1
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 1.1e-133 481.1 346 69.4
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 3.1e-125 453.0 285 75.8
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.3e-123 447.6 264 78.8
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.4e-117 427.6 284 72.2
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 3.3e-111 406.4 292 68.2
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.1e-109 399.8 250 75.6
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 2.7e-108 396.7 288 66.7
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 2.1e-105 387.1 285 66.7
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 5.2e-80 302.8 247 61.9
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.2e-73 279.3 204 67.6
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 1.4e-56 224.9 468 33.1
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 7.1e-53 212.6 473 32.8
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 1.5e-47 194.9 131 69.5
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.2e-39 168.7 148 53.4
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.0e-32 143.7 212 42.5
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 7.6e-31 139.4 109 60.6
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 2.6e-23 114.4 83 65.1
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 6.5e-22 109.8 61 78.7
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-18 99.0 142 46.5
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 2.8e-17 94.4 59 69.5
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 1.1e-16 92.4 149 36.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.3e-09 68.9 171 34.5
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 2.2e-06 58.2 47 57.4
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 8.5e-06 56.2 37 67.6


User provided reference genes

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