Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G245 Amborella trichopoda HOM05D003789 ORTHO05D004158 6.1e-29 130.2 68 100.0
ATR1134G020 Amborella trichopoda HOM05D027102 ORTHO05D004158 9.7e-19 96.3 58 86.2
Lj3C690T4 Lonicera japonica HOM05D003789 ORTHO05D004158 8.5e-15 83.2 68 70.6
CAN.G638.43 Capsicum annuum HOM05D003789 ORTHO05D004158 1.9e-14 82.0 58 77.6
Solyc03g005620.4 Solanum lycopersicum HOM05D003789 ORTHO05D004158 1.9e-14 82.0 58 77.6
Sopen03g001620 Solanum pennellii HOM05D003789 ORTHO05D004158 1.9e-14 82.0 58 77.6
PGSC0003DMG400013454 Solanum tuberosum HOM05D003789 ORTHO05D004158 1.9e-14 82.0 58 77.6
CDE04G3651 Ceratophyllum demersum HOM05D003789 ORTHO05D004158 2.5e-14 81.6 58 77.6
Lj5g0000033 Lotus japonicus HOM05D003789 ORTHO05D004158 2.5e-14 81.6 58 77.6
unitig_746.g26888 Utricularia gibba HOM05D003789 ORTHO05D004158 2.5e-14 81.6 58 77.6
HPP92_012912 Vanilla planifolia HOM05D003789 ORTHO05D004158 2.5e-14 81.6 58 77.6
Ah.13g072580 Amaranthus hybridus HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
CAN.G220.37 Capsicum annuum HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
AUR62002162 Chenopodium quinoa HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
AUR62015547 Chenopodium quinoa HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
DCAR_027329 Daucus carota HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Duzib151G1033 Durio zibethinus HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
ECA248G2783 Erigeron canadensis HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Lj3A687T20 Lonicera japonica HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Lalb_Chr21g0312151 Lupinus albus HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Nitab4.5_0000044g0510 Nicotiana tabacum HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Nitab4.5_0000596g0050 Nicotiana tabacum HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Peaxi162Scf00392g00731 Petunia axillaris HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Sed0015851 Sechium edule HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Sed0025447 Sechium edule HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Solyc09g090320.2 Solanum lycopersicum HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Sopen09g033220 Solanum pennellii HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
PGSC0003DMG400017165 Solanum tuberosum HOM05D003789 ORTHO05D004158 3.2e-14 81.3 58 77.6
Actinidia11355 Actinidia chinensis HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Actinidia20820 Actinidia chinensis HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Actinidia35800 Actinidia chinensis HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Aqoxy5G00186 Aquilegia oxysepala HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Aqoxy5G00187 Aquilegia oxysepala HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
arahy.Tifrunner.gnm1.ann1.4727LR Arachis hypogaea HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
arahy.Tifrunner.gnm1.ann1.9E1YVZ Arachis hypogaea HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
arahy.Tifrunner.gnm1.ann1.R97W00 Arachis hypogaea HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Ca_09850_v3 Cicer arietinum L. HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Ciclev10004434m.g Citrus clementina HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
MELO3C023013.2 Cucumis melo HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
CsaV3_2G012640 Cucumis sativus L. HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Migut.G00503 Erythranthe guttata HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Glyma.10G182800 Glycine max HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Glyma.20G207200 Glycine max HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
HanXRQChr02g0059181 Helianthus annuus HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Lsat_1_v5_gn_6_63340 Lactuca sativa HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Medtr1g075680 Medicago truncatula HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Nitab4.5_0003268g0030 Nicotiana tabacum HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Nitab4.5_0004509g0030 Nicotiana tabacum HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Oeu002942.1 Olea europaea HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
PSO210G3313 Papaver somniferum HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
PSO832G2621 Papaver somniferum HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Peaxi162Scf00319g00815 Petunia axillaris HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Phvul.010G069638 Phaseolus vulgaris HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Psat6g117880 Pisum sativum HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
RcHm_v2.0_Chr4g0394251 Rosa chinensis HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
Hund03054 Selenicereus undatus HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
SGA_v2.0_scaffold31G12661 Striga asiatica HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
TPR.G10071 Trifolium pratense HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
TWI53G1853 Tripterygium wilfordii HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
GSVIVG01027850001 Vitis vinifera HOM05D003789 ORTHO05D004158 4.2e-14 80.9 58 77.6
CSS0032833 Camellia sinensis var. sinensis HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Cpa.g.sc380.1 Carica papaya HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Cfa014741 Carpinus fangiana HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
CiPaw.01G181800 Carya illinoinensis HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
CiPaw.02G109400 Carya illinoinensis HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Haze_11416 Corylus avellana HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Dinv29841 Davidia involucrata HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Lj6A628G38 Lonicera japonica HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Lalb_Chr02g0150271 Lupinus albus HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
MBI07_g31086_MAGBIO Magnolia biondii HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
MD13G1216300 Malus domestica HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Oeu059161.1 Olea europaea HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Prupe.1G042100 Prunus persica HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
QL06p019201 Quercus lobata HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Rhsim02G0041400 Rhododendron simsii HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
Rhsim04G0176400 Rhododendron simsii HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
TWI09G1259 Tripterygium wilfordii HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
TAR362G0255 Trochodendron aralioides HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
TAR633G1733 Trochodendron aralioides HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
vmacro08512 Vaccinium macrocarpon HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
vmacro15457 Vaccinium macrocarpon HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
VMungo0720G2756 Vigna mungo HOM05D003789 ORTHO05D004158 5.5e-14 80.5 58 77.6
EL10Ac3g04983 Beta vulgaris HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 75.9
Cc03_g05770 Coffea canephora HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 75.9
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 77.6
FAN12G2545 Fragaria x ananassa HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 77.6
FAN17G0027 Fragaria x ananassa HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 77.6
FAN22G1125 Fragaria x ananassa HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 77.6
Potri.008G169000 Populus trichocarpa HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 75.9
Potri.010G069400 Populus trichocarpa HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 75.9
Sabra08G0128800 Salix brachista HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 75.9
Sabra10G0037700 Salix brachista HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 75.9
Sc13g0005850 Simmondsia chinensis HOM05D003789 ORTHO05D004158 7.2e-14 80.1 58 75.9
Aa31LG9G3030 Aethionema arabicum HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
AL7G41920 Arabidopsis lyrata HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
AT4G14330 Arabidopsis thaliana HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
BcaB02g08616 Brassica carinata HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
BcaC01g00201 Brassica carinata HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
BcaC02g09326 Brassica carinata HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
BcaNung06100 Brassica carinata HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
A04p07720 Brassica napus HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
C03p76830 Brassica napus HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
C04p41390 Brassica napus HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
BolC3t19937H Brassica oleracea HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
BolC4t25718H Brassica oleracea HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
BraA04t16464Z Brassica rapa HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Carub.0007s2795 Capsella rubella HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
CARHR220530 Cardamine hirsuta HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
CDE12G0940 Ceratophyllum demersum HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
COL.COLO4_15914 Corchorus olitorius HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Thhalv10024385m.g Eutrema salsugineum HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Gohir.A02G040800 Gossypium hirsutum HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Gohir.A10G109600 Gossypium hirsutum HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Gohir.D02G046400 Gossypium hirsutum HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Gohir.D10G157500 Gossypium hirsutum HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Gorai.005G051200 Gossypium raimondii HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Gorai.011G176900 Gossypium raimondii HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
MD16G1221700 Malus domestica HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 77.6
Nn3g19718 Nelumbo nucifera HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Sp7g12360 Schrenkiella parvula HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Hund11906 Selenicereus undatus HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Thecc.04G258900 Theobroma cacao HOM05D003789 ORTHO05D004158 9.4e-14 79.7 58 75.9
Aa31LG8G9880 Aethionema arabicum HOM05D003789 ORTHO05D004158 1.2e-13 79.3 58 75.9
CANSAT78G0857 Cannabis sativa HOM05D003789 ORTHO05D004158 1.2e-13 79.3 58 75.9
Eucgr.H03019 Eucalyptus grandis HOM05D003789 ORTHO05D004158 1.2e-13 79.3 58 75.9
HanXRQChr12g0369731 Helianthus annuus HOM05D003789 ORTHO05D004158 1.2e-13 79.3 58 75.9
Os02g0810200 Oryza sativa ssp. japonica HOM05D003789 ORTHO05D004158 1.6e-13 79.0 58 75.9
Zm00001eb191700 Zea mays HOM05D003789 ORTHO05D004158 1.6e-13 79.0 58 75.9
Zm00001eb258470 Zea mays HOM05D003789 ORTHO05D004158 1.6e-13 79.0 58 75.9
Dinv27071 Davidia involucrata HOM05D003789 ORTHO05D004158 2.1e-13 78.6 58 75.9
ATR0736G052 Amborella trichopoda HOM05D003789 ORTHO05D004158 2.7e-13 78.2 58 74.1
A08p24380 Brassica napus HOM05D003789 ORTHO05D004158 2.7e-13 78.2 58 74.1
BraA08t34393Z Brassica rapa HOM05D003789 ORTHO05D004158 2.7e-13 78.2 58 74.1
HanXRQChr01g0008651 Helianthus annuus HOM05D003789 ORTHO05D004158 2.7e-13 78.2 58 75.9
PGR004G1142 Punica granatum HOM05D003789 ORTHO05D004158 2.7e-13 78.2 58 75.9
Manes.15G043000 Manihot esculenta HOM05D003789 ORTHO05D004158 3.6e-13 77.8 58 75.9
Manes.03G162300 Manihot esculenta HOM05D003789 ORTHO05D004158 4.7e-13 77.4 58 75.9
SEGI_13239 Sequoiadendron giganteum HOM05D003789 ORTHO05D004158 4.7e-13 77.4 58 72.4
MSTRG.4146 Avicennia marina HOM05D003789 ORTHO05D004158 1.8e-12 75.5 58 74.1
Atru.chr1.2729 Acer truncatum HOM05D003789 ORTHO05D004158 4.0e-12 74.3 63 68.3
Pp3c14_20330 Physcomitrium patens HOM05D003789 ORTHO05D004158 6.8e-12 73.6 58 69.0
Pp3c17_18420 Physcomitrium patens HOM05D003789 ORTHO05D004158 6.8e-12 73.6 58 69.0
ClCG06G007110 Citrullus lanatus HOM05D003789 ORTHO05D004158 1.2e-11 72.8 57 71.9
SEGI_24565 Sequoiadendron giganteum HOM05D003789 ORTHO05D004158 1.5e-11 72.4 58 69.0
AagrBONN_evm.TU.Sc2ySwM_117.643 Anthoceros agrestis HOM05D003789 ORTHO05D004158 2.6e-11 71.6 58 65.5
SEGI_25573 Sequoiadendron giganteum HOM05D003789 ORTHO05D004158 3.4e-11 71.2 58 67.2
SMO134G0266 Selaginella moellendorffii HOM05D003789 ORTHO05D004158 2.8e-10 68.2 58 63.8
SMO137G0194 Selaginella moellendorffii HOM05D003789 ORTHO05D004158 2.8e-10 68.2 58 63.8
Mapoly0051s0002 Marchantia polymorpha HOM05D003789 ORTHO05D004158 6.3e-10 67.0 58 65.5
Prupe.4G184200 Prunus persica HOM05D003789 ORTHO05D004158 1.4e-09 65.9 58 65.5
SMO351G0234 Selaginella moellendorffii HOM05D003789 ORTHO05D004158 4.1e-09 64.3 61 62.3
SHI10738 Sapria himalayana HOM05D003789 ORTHO05D004158 5.4e-09 63.9 48 66.7
DCAR_002311 Daucus carota HOM05D003789 ORTHO05D004158 4.5e-08 60.8 39 76.9
Prupe.1G005500 Prunus persica HOM05D003789 ORTHO05D004158 3.8e-07 57.8 52 67.3
HPP92_012886 Vanilla planifolia HOM05D003789 ORTHO05D004158 5.0e-07 57.4 42 78.6


User provided reference genes

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