Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 4.1e-171 604.7 327 100.0
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 9.7e-48 194.9 333 39.9
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.2e-47 191.8 321 39.3
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 5.9e-45 185.7 325 37.5
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.0e-44 184.9 322 38.5
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 5.0e-44 182.6 331 38.1
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 1.6e-42 177.6 321 37.4
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.7e-42 176.0 322 37.3
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 6.1e-42 175.6 321 35.8
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 7.9e-42 175.3 326 37.1
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.1e-40 171.4 323 37.8
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.4e-40 169.5 335 38.5
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 5.7e-40 169.1 321 36.8
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 9.7e-40 168.3 329 35.6
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.3e-39 167.9 330 37.0
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 2.2e-39 167.2 327 35.8
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.2e-39 167.2 304 38.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 2.8e-39 166.8 321 36.4
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 2.8e-39 166.8 322 36.3
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 6.3e-39 165.6 324 36.4
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 6.3e-39 165.6 328 36.9
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 8.2e-39 165.2 333 34.2
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.1e-38 164.9 327 35.5
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.1e-38 164.9 328 36.9
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.1e-38 164.9 324 36.4
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.8e-38 164.1 326 37.1
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.1e-38 163.3 327 36.7
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 3.1e-38 163.3 322 35.1
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 3.1e-38 163.3 321 35.2
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 4.1e-38 162.9 324 36.7
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 7.0e-38 162.2 322 35.7
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.2e-37 161.4 347 35.7
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.5e-37 161.0 347 35.7
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.5e-37 161.0 321 34.0
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 1.0e-36 158.3 321 35.8
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 1.0e-36 158.3 342 40.4
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 1.3e-36 157.9 329 35.9
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.3e-36 157.9 321 34.0
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.7e-36 157.5 328 35.4
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 2.2e-36 157.1 319 35.7
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 2.9e-36 156.8 350 32.3
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 6.5e-36 155.6 330 39.4
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 6.5e-36 155.6 328 34.8
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.1e-35 154.8 322 36.3
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 3.2e-35 153.3 338 34.6
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 4.2e-35 152.9 326 36.2
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 5.5e-35 152.5 336 33.6
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 7.2e-35 152.1 322 35.4
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 9.4e-35 151.8 321 33.6
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.1e-34 150.6 326 34.0
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 2.7e-34 150.2 329 33.7
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 3.6e-34 149.8 324 34.6
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 6.1e-34 149.1 324 34.3
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 8.0e-34 148.7 332 32.5
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.0e-33 148.3 329 33.4
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.0e-33 148.3 321 33.0
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 2.3e-33 147.1 325 32.3
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 3.0e-33 146.7 332 32.5
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.0e-33 146.7 332 32.5
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.0e-33 146.7 322 33.5
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 4.0e-33 146.4 320 31.9
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.0e-33 146.4 323 33.4
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.7e-33 145.6 332 31.9
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 6.7e-33 145.6 320 30.6
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.5e-32 144.4 313 34.5
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.5e-32 144.4 321 37.1
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.5e-32 144.4 326 35.3
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.5e-32 144.4 321 33.6
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 7.4e-32 142.1 324 34.0
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 9.7e-32 141.7 324 33.0
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.7e-31 141.0 351 33.0
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 2.2e-31 140.6 326 33.7
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.8e-31 140.2 328 34.1
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.7e-31 139.8 304 33.2
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 4.8e-31 139.4 339 31.6
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 8.2e-31 138.7 322 32.3
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 1.8e-30 137.5 324 33.6
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 3.1e-30 136.7 324 32.4
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 4.1e-30 136.3 294 36.1
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 5.3e-30 136.0 323 32.5
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.2e-29 134.8 335 31.3
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 2.0e-29 134.0 330 31.5
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 3.5e-29 133.3 329 31.9
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 4.5e-29 132.9 322 33.5
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 5.9e-29 132.5 351 31.6
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 2.9e-28 130.2 346 30.1
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 5.0e-28 129.4 379 30.3
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.1e-27 128.3 337 30.9
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.1e-27 128.3 334 30.8
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 1.1e-27 128.3 336 30.7
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 4.2e-27 126.3 328 31.7
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.2e-26 124.8 231 38.1
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.6e-26 124.4 326 29.8
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.8e-25 120.9 311 29.6
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.0e-25 120.2 231 39.4
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 6.8e-25 119.0 328 32.0
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 6.8e-25 119.0 301 29.9
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 8.8e-25 118.6 325 31.1
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 8.8e-25 118.6 325 31.1
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-24 117.9 327 31.5
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 1.5e-24 117.9 325 30.8
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 3.4e-24 116.7 304 31.6
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 4.4e-24 116.3 329 29.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 7.5e-24 115.5 321 29.0
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.7e-23 114.4 321 32.1
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.4e-22 111.3 323 30.3
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.4e-22 111.3 357 29.1
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 3.1e-22 110.2 338 27.8
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.2e-21 108.2 242 33.5
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 3.5e-21 106.7 367 25.6
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 4.5e-21 106.3 334 28.7
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 7.7e-21 105.5 324 30.9
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.0e-20 105.1 348 28.7
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 2.9e-20 103.6 325 30.2
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 3.2e-19 100.1 321 27.4
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.6e-18 97.8 100 51.0
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 8.0e-18 95.5 419 26.3
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.2e-16 91.7 112 47.3
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.4e-16 90.1 169 37.3
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 1.7e-15 87.8 153 38.6
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 2.2e-15 87.4 92 50.0
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 3.7e-15 86.7 118 42.4
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.4e-14 84.7 90 44.4
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 7.0e-14 82.4 322 25.2
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.6e-13 81.3 93 41.9
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 3.5e-13 80.1 265 26.8
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 4.5e-13 79.7 336 25.6
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.1e-11 75.1 107 39.3
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-11 74.7 94 46.8
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 7.2e-11 72.4 67 53.7
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.2e-11 72.4 55 65.5
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 1.6e-10 71.2 318 23.6
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.1e-10 70.9 50 72.0
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 1.0e-09 68.6 248 25.8
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.3e-09 67.4 125 36.0
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 6.8e-09 65.9 102 36.3
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.3e-07 61.6 74 45.9
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-06 58.5 139 35.3


User provided reference genes

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