Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 3.9e-120 434.9 228 100.0
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.2e-83 312.8 233 71.7
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 4.9e-83 311.6 226 70.8
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.3e-80 302.8 227 70.9
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 7.4e-79 297.7 230 69.6
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.3e-78 297.0 230 70.0
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.3e-78 297.0 229 69.4
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.6e-78 296.6 230 70.0
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 8.2e-78 294.3 229 66.8
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 4.1e-77 292.0 225 64.9
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 5.3e-77 291.6 230 67.8
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 5.3e-77 291.6 226 67.7
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.5e-76 290.0 229 62.9
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.5e-76 290.0 229 61.6
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.0e-76 289.7 227 67.8
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.6e-76 289.3 225 64.0
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.6e-76 289.3 227 68.7
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 3.4e-76 288.9 228 66.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 4.5e-76 288.5 230 61.3
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.7e-75 286.6 223 70.0
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 2.2e-75 286.2 231 67.1
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 2.2e-75 286.2 231 65.8
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 3.8e-75 285.4 223 69.5
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 3.8e-75 285.4 225 68.9
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 5.0e-75 285.0 228 66.2
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 6.5e-75 284.6 226 66.8
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 6.5e-75 284.6 229 66.8
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-74 283.9 229 65.5
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.1e-74 283.9 229 63.8
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 1.4e-74 283.5 227 66.5
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.9e-74 283.1 235 64.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.9e-74 283.1 217 71.0
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.5e-74 282.7 225 69.3
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.5e-74 282.7 228 67.1
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.2e-74 281.2 228 64.9
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 9.4e-74 280.8 225 67.6
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 9.4e-74 280.8 232 65.9
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.2e-73 280.4 233 57.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.1e-73 279.6 231 65.8
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 6.1e-73 278.1 225 65.3
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.1e-73 278.1 222 67.1
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.0e-72 277.3 235 63.0
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.4e-72 276.9 227 64.3
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.3e-72 276.2 229 57.2
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.0e-72 275.8 237 64.1
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 3.9e-72 275.4 222 65.3
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 6.7e-72 274.6 226 60.2
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 8.8e-72 274.2 226 60.2
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 8.8e-72 274.2 218 67.0
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 8.8e-72 274.2 228 65.4
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.1e-71 273.9 249 55.8
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.1e-71 273.9 222 67.1
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.0e-71 273.1 238 55.9
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.5e-71 272.7 214 64.5
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.5e-71 272.7 237 62.0
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.5e-71 272.7 232 64.2
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.5e-71 272.7 223 66.8
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.3e-71 272.3 224 62.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.3e-71 272.3 232 58.2
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 4.3e-71 271.9 222 59.9
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 9.7e-71 270.8 225 59.1
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.3e-70 270.4 229 55.9
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.7e-70 270.0 217 61.8
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.8e-70 269.2 233 58.4
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 4.8e-70 268.5 220 61.8
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 6.3e-70 268.1 225 61.3
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 6.3e-70 268.1 223 59.6
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 6.3e-70 268.1 220 67.7
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.1e-69 267.3 226 58.4
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.1e-69 267.3 231 58.0
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.1e-69 267.3 231 58.4
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.4e-69 266.9 226 61.1
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.8e-69 266.5 222 57.2
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.1e-69 265.8 225 61.8
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 4.1e-69 265.4 233 60.5
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.3e-69 265.0 225 57.3
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 5.3e-69 265.0 224 62.1
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 6.9e-69 264.6 221 57.5
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 6.9e-69 264.6 225 57.3
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 9.1e-69 264.2 222 57.7
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.2e-68 263.8 214 61.7
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.5e-68 263.5 221 63.8
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-68 263.1 221 61.1
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.0e-68 263.1 221 61.1
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 2.6e-68 262.7 226 58.0
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.6e-68 262.7 224 58.9
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.5e-68 261.9 226 58.0
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.5e-68 261.9 226 59.3
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 5.9e-68 261.5 227 60.8
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 7.7e-68 261.2 172 69.8
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 7.7e-68 261.2 227 61.2
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 7.7e-68 261.2 232 56.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.3e-67 260.4 239 53.6
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-67 260.4 219 58.0
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.7e-67 260.0 232 61.2
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.2e-67 259.6 210 61.9
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.9e-67 259.2 243 56.4
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.8e-67 258.8 272 53.7
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.0e-67 258.5 229 63.3
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 6.5e-67 258.1 248 57.3
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 8.5e-67 257.7 263 54.4
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 8.5e-67 257.7 257 56.4
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.9e-66 256.5 226 59.3
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 3.2e-66 255.8 164 70.1
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 3.2e-66 255.8 223 57.0
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 4.2e-66 255.4 220 64.1
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 7.2e-66 254.6 237 58.6
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.2e-65 253.8 250 56.4
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.6e-65 253.4 225 53.8
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.1e-65 253.1 163 71.2
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.1e-63 247.3 249 53.8
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.4e-63 245.4 219 62.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 7.4e-63 244.6 202 59.9
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.3e-62 243.8 228 56.6
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 3.7e-62 242.3 228 56.1
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-62 242.3 228 56.1
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-62 242.3 228 56.1
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-62 242.3 228 56.1
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 3.7e-62 242.3 223 60.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.7e-62 242.3 215 58.6
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.1e-61 240.7 227 56.4
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.4e-61 240.4 223 59.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 3.1e-61 239.2 180 62.8
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 3.1e-61 239.2 221 62.0
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.3e-61 238.4 224 56.7
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 5.3e-61 238.4 236 52.5
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 7.0e-61 238.0 272 47.1
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 7.0e-61 238.0 228 60.5
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.6e-60 236.1 220 56.8
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 5.0e-59 231.9 240 52.9
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.1e-58 230.7 141 76.6
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 3.2e-58 229.2 138 73.9
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 5.2e-56 221.9 144 72.9
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.5e-55 220.3 198 62.1
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 1.7e-54 216.9 139 71.2
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 3.1e-53 212.6 241 49.0
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.7e-52 208.0 274 44.2
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.9e-50 203.4 139 68.3
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.6e-49 199.1 150 66.0
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.8e-48 194.5 137 64.2
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.6e-47 193.0 219 53.0
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 9.8e-47 191.0 148 59.5
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.4e-45 185.3 136 63.2
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 5.9e-44 181.8 122 68.9
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.5e-42 177.2 127 64.6
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 6.1e-41 171.8 155 52.9
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 6.1e-33 145.2 91 69.2
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.2e-31 141.0 99 64.6
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-31 137.9 228 41.7
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.7e-30 137.1 129 56.6
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.3e-26 122.9 95 64.2
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.6e-25 120.6 223 33.2
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 4.0e-24 115.9 112 51.8
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.3e-19 100.9 160 35.6
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 5.0e-19 99.0 73 58.9
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 3.6e-17 92.8 123 36.6
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.6e-15 86.7 102 41.2
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 7.5e-15 85.1 119 34.5
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 3.7e-14 82.8 80 50.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 8.3e-14 81.6 97 59.8
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 2.4e-13 80.1 120 33.3
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.0e-11 74.7 69 52.2
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 8.1e-09 65.1 56 50.0
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.1e-08 64.7 95 51.6
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.4e-08 64.3 84 58.3
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.8e-08 63.9 87 54.0
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.2e-07 61.2 92 53.3
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 2.2e-06 57.0 63 44.4


User provided reference genes

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