Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.6e-289 998.8 537 100.0
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.4e-81 305.4 422 50.9
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.4e-81 305.4 422 50.9
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 1.4e-80 304.7 429 52.0
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.6e-79 301.2 426 50.2
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.1e-76 290.8 426 48.4
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 6.2e-76 289.3 426 46.7
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.8e-75 287.7 426 50.7
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 8.9e-75 285.4 426 49.8
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 5.8e-74 282.7 423 48.9
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 8.4e-73 278.9 424 49.5
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 2.4e-72 277.3 425 49.2
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 4.2e-72 276.6 426 46.2
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 5.4e-72 276.2 403 43.9
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 5.4e-72 276.2 465 45.8
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.2e-71 275.0 441 46.9
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 3.5e-71 273.5 412 48.3
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 7.8e-71 272.3 414 47.6
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 7.8e-71 272.3 400 47.0
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 1.3e-70 271.6 405 49.4
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.3e-70 271.6 464 41.6
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.1e-69 268.5 464 41.4
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.5e-69 268.1 421 48.9
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 3.3e-69 266.9 426 46.0
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 3.3e-69 266.9 425 46.8
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 4.3e-69 266.5 475 44.6
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 7.3e-69 265.8 405 46.2
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.6e-68 264.6 434 47.9
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.6e-68 264.6 426 46.9
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.1e-68 264.2 405 46.2
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 2.1e-68 264.2 425 46.6
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 6.2e-68 262.7 425 45.9
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 8.1e-68 262.3 422 47.4
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.8e-67 261.2 409 50.4
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 1.8e-67 261.2 425 47.1
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 3.1e-67 260.4 446 45.5
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 3.1e-67 260.4 404 49.5
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 4.0e-67 260.0 426 47.9
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 9.0e-67 258.8 405 48.9
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.5e-66 258.1 414 46.4
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 4.5e-66 256.5 408 47.5
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 9.9e-66 255.4 448 46.2
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.3e-65 255.0 438 42.7
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 2.2e-65 254.2 422 46.4
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 8.4e-65 252.3 428 46.0
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 4.2e-64 250.0 426 45.3
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 5.4e-64 249.6 421 43.7
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 7.1e-64 249.2 390 50.0
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 7.1e-64 249.2 434 44.9
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 9.3e-64 248.8 431 45.0
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 1.6e-63 248.1 423 46.1
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 2.3e-62 244.2 464 45.5
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 3.0e-62 243.8 412 43.9
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 3.0e-62 243.8 520 39.6
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.9e-62 243.4 464 42.7
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 5.1e-62 243.0 426 44.6
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 5.1e-62 243.0 416 47.1
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 6.7e-62 242.7 422 44.8
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 8.7e-62 242.3 392 44.6
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.1e-61 241.9 414 42.5
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 1.1e-61 241.9 464 42.7
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.9e-61 241.1 439 44.2
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 2.5e-61 240.7 426 44.6
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 7.4e-61 239.2 426 40.4
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.6e-60 238.0 426 43.9
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 2.1e-60 237.7 418 46.2
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 3.6e-60 236.9 427 43.8
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 6.2e-60 236.1 418 45.5
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 8.1e-60 235.7 415 43.1
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 8.1e-60 235.7 378 47.4
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 1.4e-59 235.0 431 42.0
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 5.3e-59 233.0 574 37.8
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 6.9e-59 232.6 421 44.9
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.2e-58 231.9 415 44.8
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 1.5e-58 231.5 421 44.4
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 5.8e-58 229.6 420 46.4
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 5.8e-58 229.6 409 44.0
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.2e-57 227.6 469 42.2
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.9e-57 227.3 400 47.8
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.9e-57 227.3 426 46.0
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 2.9e-57 227.3 278 48.2
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 6.4e-57 226.1 454 42.7
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 8.4e-57 225.7 454 42.7
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.4e-56 224.9 400 47.5
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 1.4e-56 224.9 444 43.9
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 1.9e-56 224.6 423 42.6
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 2.4e-56 224.2 400 46.2
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 3.2e-56 223.8 432 43.3
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 3.2e-56 223.8 404 46.8
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 4.2e-56 223.4 426 45.5
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 5.5e-56 223.0 423 44.2
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 5.5e-56 223.0 483 40.6
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.2e-55 221.9 414 43.2
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.6e-55 221.5 441 42.9
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.7e-55 220.7 422 41.5
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 3.5e-55 220.3 405 46.7
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 3.5e-55 220.3 444 42.3
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 4.6e-55 219.9 417 43.6
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 4.6e-55 219.9 444 42.3
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 6.0e-55 219.5 433 41.3
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 7.9e-55 219.2 419 43.0
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 1.3e-54 218.4 415 41.9
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.8e-54 218.0 462 42.0
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 2.3e-54 217.6 444 41.2
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 3.0e-54 217.2 399 43.1
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 5.1e-54 216.5 392 40.3
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 5.1e-54 216.5 433 42.5
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.1e-53 215.3 362 41.4
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 1.5e-53 214.9 416 44.2
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.5e-53 214.9 439 41.9
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.9e-53 214.5 433 41.1
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.9e-53 214.5 462 42.0
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 1.9e-53 214.5 420 42.9
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 2.5e-53 214.2 420 43.1
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 3.3e-53 213.8 404 45.5
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 4.3e-53 213.4 401 42.1
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 5.6e-53 213.0 415 44.3
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 7.4e-53 212.6 435 41.8
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 9.6e-53 212.2 451 40.8
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 1.3e-52 211.8 404 46.3
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 2.8e-52 210.7 435 41.6
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.8e-52 210.7 414 44.4
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 2.8e-52 210.7 427 42.9
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 6.2e-52 209.5 415 40.0
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.8e-51 208.0 399 44.1
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.8e-51 208.0 399 44.1
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 2.4e-51 207.6 425 40.5
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.1e-51 207.2 435 39.1
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 5.3e-51 206.5 416 42.3
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 6.9e-51 206.1 429 41.0
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 6.9e-51 206.1 395 45.6
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.5e-50 204.9 431 41.1
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 3.4e-50 203.8 417 42.2
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 7.6e-50 202.6 433 39.3
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 7.6e-50 202.6 376 42.8
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.0e-49 202.2 428 43.7
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.8e-49 200.3 391 42.7
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 1.2e-47 195.3 415 40.7
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.5e-47 193.7 428 42.8
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 3.5e-47 193.7 406 45.1
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.3e-46 191.8 458 37.3
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 1.3e-46 191.8 428 37.1
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 1.8e-46 191.4 439 37.8
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 5.1e-46 189.9 430 42.6
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.3e-45 187.2 346 42.2
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 5.7e-45 186.4 424 37.3
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 3.7e-44 183.7 399 43.6
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.8e-43 181.4 406 39.9
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.1e-43 180.3 254 43.3
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 1.3e-41 175.3 259 47.1
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.1e-40 172.2 475 38.1
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.6e-39 168.3 410 35.6
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 7.9e-39 166.0 333 38.4
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.5e-37 161.0 237 41.4
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 2.2e-36 157.9 423 37.8
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 2.8e-36 157.5 234 43.6
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 9.1e-35 152.5 404 39.9
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 3.8e-33 147.1 441 34.2
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 9.4e-32 142.5 438 33.1
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 2.1e-31 141.4 568 31.9
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 3.6e-31 140.6 310 42.9
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 6.1e-31 139.8 405 32.6
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.9e-31 139.4 397 33.8
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 2.0e-29 134.8 579 32.6
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 5.7e-29 133.3 511 29.4
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 2.8e-28 131.0 408 35.0
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 8.2e-28 129.4 404 32.9
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 6.1e-23 113.2 442 29.9
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 6.1e-23 113.2 442 29.9
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.4e-22 112.1 342 36.0
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.9e-17 94.4 187 34.2
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.5e-16 92.0 307 37.5
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.3e-12 79.0 325 36.9
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.9e-08 65.1 45 68.9
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 8.0e-07 59.7 173 37.0


User provided reference genes

Program Settings