Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 2.9e-154 548.5 275 100.0
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 4.7e-80 302.0 258 63.6
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.2e-78 297.4 268 61.2
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 3.1e-71 272.7 248 60.9
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 1.5e-70 270.4 244 59.4
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 1.7e-69 266.9 259 57.5
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.2e-69 266.5 246 60.6
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 2.9e-69 266.2 258 57.8
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.1e-68 264.2 224 63.4
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 1.4e-68 263.8 239 61.1
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.4e-68 263.8 242 61.2
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 4.2e-68 262.3 261 59.4
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 9.3e-68 261.2 240 60.8
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 4.6e-67 258.8 242 59.5
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 6.0e-67 258.5 253 57.3
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 6.0e-67 258.5 257 58.0
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 3.9e-66 255.8 255 56.1
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 6.6e-66 255.0 240 60.8
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 8.7e-66 254.6 222 62.6
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 3.3e-65 252.7 224 60.7
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 3.3e-65 252.7 259 55.6
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 7.3e-65 251.5 237 57.8
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 4.8e-64 248.8 224 59.8
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.2e-64 248.4 253 55.7
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.2e-64 248.4 243 56.0
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 8.1e-64 248.1 224 59.4
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.1e-63 247.7 253 55.3
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.8e-63 246.9 245 55.9
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 5.3e-63 245.4 253 55.3
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 5.3e-63 245.4 238 58.4
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 9.0e-63 244.6 224 58.9
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 2.0e-62 243.4 271 55.7
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 2.0e-62 243.4 244 56.1
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 3.4e-62 242.7 253 55.3
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 4.4e-62 242.3 224 58.5
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 7.6e-62 241.5 225 56.9
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 9.9e-62 241.1 232 59.9
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 9.9e-62 241.1 219 59.4
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.7e-61 240.4 207 62.8
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.7e-61 240.4 244 56.1
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.7e-61 240.4 236 58.1
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 4.9e-61 238.8 237 57.4
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 6.4e-61 238.4 263 52.1
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.1e-60 237.7 244 54.9
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.4e-60 237.3 244 54.9
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.2e-60 236.1 233 58.4
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 4.2e-60 235.7 237 54.9
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 5.4e-60 235.3 216 59.3
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 5.4e-60 235.3 247 55.5
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 9.3e-60 234.6 270 53.7
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 9.3e-60 234.6 249 53.4
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 1.2e-59 234.2 250 53.2
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 3.5e-59 232.6 214 58.4
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 6.0e-59 231.9 214 57.9
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.3e-58 230.7 250 52.4
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 1.7e-58 230.3 238 52.9
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 1.9e-57 226.9 229 56.3
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 3.3e-57 226.1 238 52.9
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 5.6e-57 225.3 258 50.8
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 9.6e-57 224.6 236 54.2
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 1.3e-56 224.2 236 53.4
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 1.6e-56 223.8 254 52.4
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 1.6e-56 223.8 272 50.7
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 2.1e-56 223.4 227 55.9
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.8e-56 223.0 223 57.8
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.8e-56 223.0 223 57.8
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 3.6e-56 222.6 219 56.6
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.8e-55 220.3 223 55.6
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 1.8e-55 220.3 229 56.8
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 4.0e-55 219.2 227 55.1
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 5.3e-55 218.8 223 54.3
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 3.4e-54 216.1 250 52.8
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 3.4e-54 216.1 247 51.8
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 5.8e-54 215.3 206 59.2
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 7.6e-54 214.9 249 53.8
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 2.2e-53 213.4 233 52.8
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.8e-53 212.6 153 71.9
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 4.9e-53 212.2 271 49.1
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 1.9e-52 210.3 217 55.8
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 2.4e-52 209.9 251 50.2
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 5.5e-52 208.8 256 50.0
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.2e-51 207.6 210 57.1
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 6.0e-51 205.3 264 48.5
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 7.9e-51 204.9 222 54.1
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 1.0e-50 204.5 273 49.1
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 1.3e-48 197.6 185 60.0
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 1.8e-47 193.7 240 47.1
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 9.0e-47 191.4 197 56.9
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 1.0e-45 188.0 245 46.5
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 1.9e-44 183.7 258 45.0
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.9e-44 183.7 159 59.7
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 4.2e-44 182.6 257 45.9
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 7.9e-43 178.3 263 43.3
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 3.0e-42 176.4 173 57.2
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 1.1e-41 174.5 260 43.8
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 3.3e-41 172.9 237 45.6
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 3.3e-41 172.9 261 41.4
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 9.6e-41 171.4 247 44.9
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 1.3e-40 171.0 278 42.8
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.6e-40 170.6 250 44.4
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 4.8e-40 169.1 210 50.0
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 4.8e-40 169.1 247 45.3
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 4.8e-40 169.1 210 50.0
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 1.4e-39 167.5 251 44.2
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 4.1e-39 166.0 219 47.9
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 6.9e-39 165.2 251 43.8
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 6.9e-39 165.2 235 44.7
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 9.0e-39 164.9 152 59.2
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 9.0e-39 164.9 230 45.7
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 1.6e-35 154.1 289 37.7
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.3e-34 151.0 92 82.6
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 3.0e-34 149.8 111 68.5
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 5.3e-31 139.0 181 51.9
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 8.5e-29 131.7 93 71.0
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 3.6e-27 126.3 149 49.0
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 1.8e-26 124.0 157 47.1
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 3.3e-25 119.8 156 43.6
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 6.3e-24 115.5 216 38.4
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 1.2e-22 111.3 86 65.1
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.6e-22 110.2 104 60.6
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.0e-21 108.2 86 64.0
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 1.3e-21 107.8 208 37.5
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 9.4e-20 101.7 141 48.2
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 3.6e-19 99.8 215 34.4
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 1.0e-18 98.2 62 79.0
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 9.7e-17 91.7 117 46.2
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.2e-14 84.7 63 66.7
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 2.2e-13 80.5 117 47.0
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 2.2e-13 80.5 48 85.4
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 4.7e-11 72.8 90 46.7
Cre09.g388282 Chlamydomonas reinhardtii HOM05D005913 ORTHO05D007138 4.5e-06 56.2 210 27.6
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 7.7e-06 55.5 103 41.7


User provided reference genes

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