Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G092 Amborella trichopoda HOM05D002560 ORTHO05D013637 7.4e-59 230.3 116 100.0
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 2.7e-37 158.7 115 70.4
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 6.1e-37 157.5 115 69.6
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 7.9e-37 157.1 115 69.6
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.9e-37 157.1 115 69.6
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.9e-37 157.1 115 69.6
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.9e-37 157.1 115 69.6
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.9e-37 157.1 115 69.6
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 7.9e-37 157.1 115 69.6
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.8e-36 156.0 115 70.4
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.8e-36 156.0 115 70.4
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 1.8e-36 156.0 115 68.7
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 2.3e-36 155.6 115 68.7
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 2.3e-36 155.6 115 68.7
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.1e-36 154.5 115 69.6
COL.COLO4_08633 Corchorus olitorius HOM05D002560 ORTHO05D003782 6.7e-36 154.1 115 69.6
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 6.7e-36 154.1 115 69.6
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 6.7e-36 154.1 115 68.7
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.1e-35 153.3 115 68.7
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 1.1e-35 153.3 115 69.6
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 1.5e-35 152.9 115 68.7
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.5e-35 152.9 115 68.7
Cpa.g.sc86.9 Carica papaya HOM05D002560 ORTHO05D013637 2.0e-35 152.5 114 68.4
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 2.0e-35 152.5 115 67.8
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 2.0e-35 152.5 115 67.8
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 2.0e-35 152.5 115 67.8
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.6e-35 152.1 115 68.7
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 2.6e-35 152.1 115 66.1
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 3.3e-35 151.8 115 68.7
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 3.3e-35 151.8 115 67.8
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 3.3e-35 151.8 109 67.9
Cpa.g.sc86.11 Carica papaya HOM05D002560 ORTHO05D013637 4.4e-35 151.4 115 67.8
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 4.4e-35 151.4 107 70.1
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 4.4e-35 151.4 115 68.7
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 4.4e-35 151.4 115 67.8
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 4.4e-35 151.4 115 68.7
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 4.4e-35 151.4 116 64.7
VMungo1383G3009 Vigna mungo HOM05D002560 ORTHO05D003782 5.7e-35 151.0 115 67.8
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 7.4e-35 150.6 115 67.0
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 7.4e-35 150.6 115 67.8
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 7.4e-35 150.6 115 67.8
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 7.4e-35 150.6 115 67.0
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 9.7e-35 150.2 115 68.7
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 9.7e-35 150.2 115 67.0
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 9.7e-35 150.2 115 69.6
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.3e-34 149.8 115 67.8
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.3e-34 149.8 115 66.1
arahy.Tifrunner.gnm1.ann1.D1231E Arachis hypogaea HOM05D002560 ORTHO05D003782 1.7e-34 149.4 115 67.0
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.7e-34 149.4 115 67.8
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.7e-34 149.4 115 67.8
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.7e-34 149.4 115 67.8
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 2.2e-34 149.1 109 70.6
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 2.2e-34 149.1 115 67.0
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 2.2e-34 149.1 115 67.0
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 2.2e-34 149.1 115 67.0
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 2.2e-34 149.1 115 67.0
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 2.2e-34 149.1 115 67.8
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 2.8e-34 148.7 115 66.1
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.8e-34 148.7 109 68.8
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 2.8e-34 148.7 115 66.1
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 2.8e-34 148.7 115 65.2
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.8e-34 148.7 115 67.0
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 2.8e-34 148.7 115 66.1
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 2.8e-34 148.7 115 65.2
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 3.7e-34 148.3 115 66.1
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 3.7e-34 148.3 115 66.1
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 3.7e-34 148.3 115 66.1
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 3.7e-34 148.3 115 67.0
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 3.7e-34 148.3 115 66.1
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 6.3e-34 147.5 115 67.0
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 6.3e-34 147.5 115 67.0
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 6.3e-34 147.5 115 67.0
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 6.3e-34 147.5 115 65.2
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 8.2e-34 147.1 115 64.3
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 8.2e-34 147.1 115 66.1
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 8.2e-34 147.1 115 67.0
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 8.2e-34 147.1 116 64.7
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 8.2e-34 147.1 115 67.0
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 8.2e-34 147.1 115 67.0
Atru.chr8.2363 Acer truncatum HOM05D002560 ORTHO05D013637 1.1e-33 146.7 107 65.4
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 1.1e-33 146.7 115 64.3
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 1.1e-33 146.7 115 64.3
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 1.1e-33 146.7 113 65.5
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.1e-33 146.7 115 65.2
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.4e-33 146.4 116 64.7
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.4e-33 146.4 114 64.0
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.8e-33 146.0 115 67.0
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 2.4e-33 145.6 115 66.1
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 2.4e-33 145.6 109 64.2
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 3.1e-33 145.2 109 67.0
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 4.1e-33 144.8 113 63.7
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 5.3e-33 144.4 115 66.1
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 5.3e-33 144.4 108 68.5
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 5.3e-33 144.4 115 66.1
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 5.3e-33 144.4 115 64.3
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 5.3e-33 144.4 114 63.2
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 5.3e-33 144.4 117 65.0
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 5.3e-33 144.4 117 65.0
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 7.0e-33 144.1 115 64.3
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 7.0e-33 144.1 115 65.2
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 9.1e-33 143.7 115 64.3
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 1.2e-32 143.3 116 66.4
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 2.6e-32 142.1 115 62.6
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 3.5e-32 141.7 109 65.1
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 4.5e-32 141.4 113 61.1
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 4.5e-32 141.4 115 62.6
Sopen10g027890 Solanum pennellii HOM05D002560 ORTHO05D013637 4.5e-32 141.4 113 64.6
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 4.5e-32 141.4 113 63.7
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 5.9e-32 141.0 112 58.9
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 5.9e-32 141.0 113 61.1
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 7.7e-32 140.6 113 66.4
arahy.Tifrunner.gnm1.ann1.UH8YKH Arachis hypogaea HOM05D002560 ORTHO05D013637 2.2e-31 139.0 107 67.3
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 2.2e-31 139.0 106 63.2
RcHm_v2.0_Chr3g0492271 Rosa chinensis HOM05D002560 ORTHO05D013637 3.8e-31 138.3 111 65.8
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 3.8e-31 138.3 114 63.2
HanXRQChr10g0288611 Helianthus annuus HOM05D002560 ORTHO05D003782 6.5e-31 137.5 109 63.3
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.5e-30 136.3 115 60.9
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.5e-30 136.3 109 60.6
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 1.5e-30 136.3 115 62.6
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 1.9e-30 136.0 105 66.7
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 5.5e-30 134.4 103 66.0
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 5.5e-30 134.4 113 61.9
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 7.2e-30 134.0 111 55.0
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 9.4e-30 133.7 109 64.2
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 3.6e-29 131.7 116 60.3
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 3.6e-29 131.7 115 54.8
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 6.1e-29 131.0 115 56.5
Zm00001eb195140 Zea mays HOM05D002560 ORTHO05D003782 2.3e-28 129.0 113 62.8
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.9e-28 128.3 103 63.1
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 3.9e-28 128.3 101 63.4
TAR636G3231 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.1e-27 126.7 115 60.0
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 1.5e-27 126.3 109 56.0
Hma1.2p1_1349F.1_g277330 Hydrangea macrophylla HOM05D002560 ORTHO05D013637 2.0e-27 125.9 95 67.4
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 9.7e-27 123.6 115 59.1
Glyma.09G278700 Glycine max HOM05D002560 ORTHO05D013637 9.7e-27 123.6 111 60.4
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 9.7e-27 123.6 115 59.1
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 2.2e-26 122.5 115 58.3
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 8.2e-26 120.6 114 57.0
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 1.4e-25 119.8 115 57.4
CSS0033860 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.8e-25 119.4 109 55.0
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.8e-25 119.4 110 56.4
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 1.8e-25 119.4 115 57.4
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 2.4e-25 119.0 110 57.3
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 2.4e-25 119.0 115 57.4
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 4.1e-25 118.2 100 58.0
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 4.1e-25 118.2 115 55.7
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 1.6e-24 116.3 115 56.5
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.0e-23 113.6 104 58.7
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 2.2e-23 112.5 87 64.4
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 3.8e-23 111.7 80 70.0
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 3.8e-23 111.7 80 70.0
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 3.8e-23 111.7 80 70.0
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 3.8e-23 111.7 80 70.0
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 3.8e-23 111.7 103 56.3
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 5.0e-23 111.3 116 54.3
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 5.0e-23 111.3 114 50.0
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 1.1e-22 110.2 80 68.8
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 1.1e-22 110.2 80 68.8
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.5e-22 109.8 111 53.2
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 1.9e-22 109.4 80 70.0
Sopen10g027930 Solanum pennellii HOM05D002560 ORTHO05D013637 1.9e-22 109.4 84 66.7
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 3.2e-22 108.6 80 71.2
arahy.Tifrunner.gnm1.ann1.DD37CG Arachis hypogaea HOM05D002560 ORTHO05D013637 2.1e-21 105.9 70 74.3
arahy.Tifrunner.gnm1.ann1.QBUW59 Arachis hypogaea HOM05D002560 ORTHO05D013637 2.1e-21 105.9 70 74.3
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 5.2e-20 101.3 117 45.3
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 6.8e-20 100.9 80 66.2
GSVIVG01030231001 Vitis vinifera HOM05D002560 ORTHO05D013637 7.5e-19 97.4 77 64.9
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 6.3e-18 94.4 107 46.7
Lj2C63G17 Lonicera japonica HOM05D002560 ORTHO05D003782 4.5e-16 88.2 100 48.0
MELO3C028507.2 Cucumis melo HOM05D002560 ORTHO05D013637 2.7e-13 79.0 60 71.7
Carub.0006s0006 Capsella rubella HOM05D002560 ORTHO05D013637 6.8e-12 74.3 70 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 3.4e-11 72.0 56 53.6
Cfa024140 Carpinus fangiana HOM05D002560 ORTHO05D003782 2.2e-10 69.3 108 35.2
CBR_g54859 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-09 65.5 84 44.0
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 1.5e-06 56.6 78 39.7


User provided reference genes

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