Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 3.6e-174 614.8 300 100.0
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 4.2e-74 282.3 327 49.5
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 1.4e-29 134.4 276 37.0
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.1e-28 130.6 289 36.7
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 4.6e-28 129.4 257 35.8
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 3.9e-27 126.3 265 34.3
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 1.8e-24 117.5 272 32.7
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 4.0e-24 116.3 255 33.7
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.0e-24 116.3 330 32.1
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 5.2e-24 115.9 260 33.1
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 8.9e-24 115.2 183 38.8
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 8.9e-24 115.2 161 41.6
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 8.9e-24 115.2 147 43.5
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 1.5e-23 114.4 259 31.7
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.0e-23 114.0 339 30.7
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 3.4e-23 113.2 141 44.0
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 5.8e-23 112.5 307 31.9
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 7.6e-23 112.1 293 33.1
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 7.6e-23 112.1 246 34.1
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 1.3e-22 111.3 301 32.6
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.2e-22 110.5 245 33.9
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.2e-22 110.5 347 31.4
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 3.8e-22 109.8 298 33.2
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 6.4e-22 109.0 196 36.7
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 8.4e-22 108.6 246 33.7
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.1e-21 108.2 161 40.4
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 1.1e-21 108.2 167 38.3
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.4e-21 107.8 338 31.1
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 1.4e-21 107.8 183 37.2
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.9e-21 107.5 290 32.4
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 2.4e-21 107.1 286 31.1
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 2.4e-21 107.1 306 31.4
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 3.2e-21 106.7 161 39.8
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 4.2e-21 106.3 150 39.3
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 5.4e-21 105.9 162 41.4
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 5.4e-21 105.9 314 32.5
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 5.4e-21 105.9 144 43.1
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.4e-21 105.9 155 41.9
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 1.2e-20 104.8 187 36.4
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 1.6e-20 104.4 155 41.3
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 2.1e-20 104.0 169 39.6
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 2.1e-20 104.0 136 42.6
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 2.1e-20 104.0 280 30.4
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.7e-20 103.6 142 43.7
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 4.6e-20 102.8 167 37.1
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.6e-20 102.8 309 30.4
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 6.0e-20 102.4 144 41.0
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 6.0e-20 102.4 153 36.6
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 7.8e-20 102.1 148 41.2
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 7.8e-20 102.1 153 37.3
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 1.0e-19 101.7 137 42.3
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 1.0e-19 101.7 153 36.6
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 1.0e-19 101.7 298 32.2
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 1.0e-19 101.7 136 42.6
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 1.0e-19 101.7 149 40.9
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 1.0e-19 101.7 147 40.8
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 1.0e-19 101.7 138 39.9
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 1.3e-19 101.3 146 39.7
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 1.7e-19 100.9 141 40.4
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 2.3e-19 100.5 179 37.4
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 3.0e-19 100.1 300 30.3
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 3.0e-19 100.1 143 38.5
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 3.9e-19 99.8 167 36.5
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 3.9e-19 99.8 153 36.6
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 3.9e-19 99.8 142 40.8
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 8.7e-19 98.6 287 29.6
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 8.7e-19 98.6 164 37.2
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 8.7e-19 98.6 303 30.0
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.9e-18 97.4 164 36.0
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 1.9e-18 97.4 163 39.9
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 3.3e-18 96.7 153 40.5
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 3.3e-18 96.7 305 31.5
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 4.3e-18 96.3 137 40.9
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 4.3e-18 96.3 157 38.2
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 5.6e-18 95.9 164 39.6
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 5.6e-18 95.9 153 40.5
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 3.6e-17 93.2 133 39.1
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.6e-17 93.2 133 39.1
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 6.2e-17 92.4 223 30.5
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 6.2e-17 92.4 156 40.4
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 1.8e-16 90.9 182 34.1
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 1.8e-16 90.9 169 37.9
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.8e-16 90.9 328 27.4
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 3.1e-16 90.1 169 36.1
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 6.9e-16 89.0 158 34.8
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.5e-15 87.8 336 30.1
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.5e-15 87.8 129 40.3
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 2.0e-15 87.4 300 29.7
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 3.4e-15 86.7 146 40.4
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 5.8e-15 85.9 308 28.9
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 5.8e-15 85.9 322 28.9
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 5.8e-15 85.9 246 30.5
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 1.3e-14 84.7 159 34.6
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.3e-14 84.7 298 28.5
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 1.3e-14 84.7 162 37.0
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 1.7e-14 84.3 138 33.3
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 2.2e-14 84.0 347 28.8
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 2.2e-14 84.0 141 37.6
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.9e-14 83.6 134 39.6
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 3.8e-14 83.2 144 36.8
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.9e-13 80.9 135 37.8
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 7.1e-13 79.0 174 28.2
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 1.2e-12 78.2 344 28.2
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 2.7e-12 77.0 124 38.7
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 3.5e-12 76.6 141 34.0
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 3.5e-12 76.6 205 30.2
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 1.0e-11 75.1 126 34.9
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 1.0e-11 75.1 144 37.5
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.3e-11 74.7 138 35.5
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 2.3e-11 73.9 167 32.3
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.3e-11 73.9 139 35.3
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 6.7e-11 72.4 71 50.7
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 6.7e-11 72.4 129 34.9
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 1.5e-10 71.2 130 35.4
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 1.5e-10 71.2 131 34.4
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.9e-10 70.9 137 33.6
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 2.5e-10 70.5 177 29.9
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 7.4e-10 68.9 198 27.8
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 7.4e-10 68.9 122 36.9
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 1.6e-09 67.8 150 31.3
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 2.8e-09 67.0 82 42.7
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 3.6e-09 66.6 125 36.0
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 6.2e-09 65.9 137 30.7
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 6.2e-09 65.9 125 35.2
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 4.0e-08 63.2 138 32.6
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 4.0e-08 63.2 124 33.9
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 9.0e-08 62.0 141 31.2
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 1.2e-07 61.6 141 32.6
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.2e-07 61.6 141 32.6
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.5e-07 61.2 130 30.0
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 2.0e-07 60.8 167 26.3
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 2.6e-07 60.5 53 50.9
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.6e-07 60.5 127 29.1
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.6e-07 60.5 161 31.7
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 4.5e-07 59.7 161 31.1
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 5.8e-07 59.3 138 32.6
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 7.6e-07 58.9 126 28.6
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 7.6e-07 58.9 126 28.6
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 9.9e-07 58.5 230 22.6
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 9.9e-07 58.5 149 28.2
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 9.9e-07 58.5 167 25.7
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 2.2e-06 57.4 181 24.3
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 3.8e-06 56.6 161 27.3
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 6.4e-06 55.8 168 26.2
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 6.4e-06 55.8 129 28.7


User provided reference genes

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