Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 7.4e-80 300.4 148 100.0
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 2.6e-64 248.8 126 92.9
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 2.2e-63 245.7 125 91.2
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 5.3e-62 241.1 125 89.6
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 4.5e-61 238.0 128 87.5
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 4.5e-61 238.0 125 88.0
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 1.0e-60 236.9 136 82.4
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 1.7e-60 236.1 134 82.1
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 1.7e-60 236.1 125 86.4
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 2.2e-60 235.7 125 88.0
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 2.2e-60 235.7 125 88.0
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 2.2e-60 235.7 128 85.2
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 2.9e-60 235.3 125 87.2
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 2.9e-60 235.3 124 88.7
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 5.0e-60 234.6 125 87.2
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 6.5e-60 234.2 125 87.2
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 6.5e-60 234.2 135 80.7
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 1.5e-59 233.0 126 87.3
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 3.2e-59 231.9 125 84.8
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 3.2e-59 231.9 131 83.2
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 4.2e-59 231.5 124 87.9
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 4.2e-59 231.5 125 84.8
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 9.4e-59 230.3 122 86.9
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 9.4e-59 230.3 138 78.3
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 9.4e-59 230.3 125 85.6
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 1.2e-58 229.9 122 86.1
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 1.2e-58 229.9 125 86.4
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 2.1e-58 229.2 125 86.4
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 2.7e-58 228.8 125 84.0
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 3.6e-58 228.4 125 84.8
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 3.6e-58 228.4 125 84.8
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 3.6e-58 228.4 125 84.8
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 3.6e-58 228.4 125 84.8
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 4.7e-58 228.0 125 83.2
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 6.1e-58 227.6 125 84.8
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 6.1e-58 227.6 125 84.8
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 6.1e-58 227.6 125 84.8
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 8.0e-58 227.3 125 84.0
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 1.4e-57 226.5 125 83.2
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 2.3e-57 225.7 125 83.2
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 2.3e-57 225.7 125 82.4
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 3.0e-57 225.3 125 84.0
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 3.0e-57 225.3 125 84.0
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 3.0e-57 225.3 125 84.0
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 3.0e-57 225.3 125 84.0
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 3.0e-57 225.3 137 78.8
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 3.0e-57 225.3 125 83.2
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 4.0e-57 224.9 124 84.7
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 4.0e-57 224.9 125 83.2
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 5.2e-57 224.6 125 81.6
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 5.2e-57 224.6 125 81.6
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 5.2e-57 224.6 124 83.9
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 5.2e-57 224.6 125 83.2
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 5.2e-57 224.6 125 83.2
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 8.8e-57 223.8 128 80.5
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 8.8e-57 223.8 128 79.7
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 1.5e-56 223.0 125 81.6
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 1.5e-56 223.0 125 82.4
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 2.0e-56 222.6 125 80.8
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 2.6e-56 222.2 125 82.4
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 2.6e-56 222.2 128 78.9
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 3.3e-56 221.9 125 80.8
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 4.4e-56 221.5 132 77.3
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 5.7e-56 221.1 121 83.5
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 7.5e-56 220.7 140 75.0
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 9.7e-56 220.3 125 80.0
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 9.7e-56 220.3 131 78.6
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.2e-55 219.2 122 82.0
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 2.2e-55 219.2 128 79.7
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 2.2e-55 219.2 125 79.2
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 2.8e-55 218.8 124 83.1
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 2.8e-55 218.8 128 78.9
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 2.8e-55 218.8 125 80.8
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 4.8e-55 218.0 132 75.8
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 6.3e-55 217.6 142 69.7
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.4e-54 216.5 122 79.5
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.4e-54 216.5 122 79.5
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 1.4e-54 216.5 125 80.8
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 1.8e-54 216.1 125 79.2
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 1.8e-54 216.1 125 80.0
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 1.8e-54 216.1 125 78.4
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 3.1e-54 215.3 136 74.3
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 4.1e-54 214.9 128 76.6
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 4.1e-54 214.9 125 78.4
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 5.3e-54 214.5 125 78.4
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 5.3e-54 214.5 125 78.4
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 5.3e-54 214.5 125 78.4
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 7.0e-54 214.2 127 78.0
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 1.6e-53 213.0 125 80.0
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 1.6e-53 213.0 125 80.0
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 2.0e-53 212.6 137 71.5
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 2.7e-53 212.2 127 77.2
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 5.0e-52 208.0 125 78.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 3.2e-51 205.3 106 87.7
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 2.7e-50 202.2 133 72.2
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.0e-44 181.4 125 70.4
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 1.2e-42 176.8 97 83.5
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 2.8e-42 175.6 128 63.3
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 2.8e-42 175.6 123 65.0
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 2.3e-41 172.6 127 63.8
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 5.4e-38 161.4 112 67.0
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 3.8e-36 155.2 120 60.8
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 2.8e-34 149.1 101 69.3
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 3.6e-34 148.7 88 79.5
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 3.6e-34 148.7 92 73.9
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 2.0e-32 142.9 75 86.7
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 1.2e-29 133.7 127 56.7
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 7.8e-21 104.4 61 75.4
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 3.9e-20 102.1 69 68.1
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 2.1e-18 96.3 122 46.7
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.1e-09 67.4 53 62.3


User provided reference genes

Program Settings