Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 0.0e+00 1885.9 1037 100.0
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 0.0e+00 1267.3 1067 67.0
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 0.0e+00 1264.6 1030 66.1
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 0.0e+00 1248.0 1034 67.8
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1245.0 1030 67.4
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1243.0 1030 67.3
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 0.0e+00 1224.9 1028 66.3
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1223.4 1073 65.7
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 0.0e+00 1204.9 1033 64.9
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 0.0e+00 1204.9 1030 65.2
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 0.0e+00 1204.1 1039 67.3
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1203.0 1039 61.3
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 0.0e+00 1199.9 1028 61.6
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 0.0e+00 1198.0 1028 61.8
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 0.0e+00 1194.9 1036 63.8
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 0.0e+00 1192.2 1036 67.0
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1191.8 1036 60.5
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1190.6 1044 62.8
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1189.5 1036 60.4
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1188.7 1033 63.3
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 0.0e+00 1188.7 1036 63.1
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 0.0e+00 1184.9 1032 61.3
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 0.0e+00 1182.9 1040 65.4
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1179.5 1037 60.6
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 0.0e+00 1176.8 1034 62.4
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 0.0e+00 1172.9 1033 63.7
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1172.5 1038 63.3
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 0.0e+00 1171.4 1034 63.5
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1171.0 1095 61.6
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1170.2 1029 59.7
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 0.0e+00 1168.3 1030 60.8
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1167.9 1058 59.6
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1166.4 1029 59.5
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 0.0e+00 1164.4 1104 59.7
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1161.7 1017 65.8
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1159.1 1025 65.1
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1157.5 1102 60.6
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1154.0 1029 64.8
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 0.0e+00 1153.7 1036 62.4
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 0.0e+00 1149.4 1096 59.3
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1142.9 1031 61.7
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1132.5 1043 60.7
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1132.5 1043 60.7
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1130.2 1031 61.6
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1127.9 1034 61.7
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 0.0e+00 1126.3 1014 61.1
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 0.0e+00 1124.0 1032 61.0
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 0.0e+00 1123.6 1034 58.9
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1120.9 1033 61.8
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 0.0e+00 1118.6 1033 64.0
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 0.0e+00 1118.2 1037 60.8
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 0.0e+00 1117.4 1036 58.6
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1115.1 1027 59.0
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 0.0e+00 1114.8 1018 59.2
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 0.0e+00 1114.4 1081 56.8
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1114.4 1032 61.8
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 0.0e+00 1114.0 1025 60.3
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 0.0e+00 1113.2 1037 64.1
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 0.0e+00 1111.3 1032 59.8
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 0.0e+00 1111.3 1037 60.5
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1110.5 1038 63.4
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 0.0e+00 1110.5 1038 63.4
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 0.0e+00 1110.5 1058 59.8
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1110.1 1065 60.8
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1110.1 1043 63.7
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 0.0e+00 1109.7 1039 63.8
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1108.6 1037 64.4
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 0.0e+00 1105.1 1031 61.7
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 0.0e+00 1102.4 1032 59.2
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 0.0e+00 1102.0 1037 63.1
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 0.0e+00 1100.1 1040 64.0
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 0.0e+00 1099.0 1038 62.9
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1097.0 1032 56.9
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 0.0e+00 1097.0 989 65.5
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1096.3 1049 58.4
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1094.3 1029 58.8
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 0.0e+00 1094.3 1031 57.8
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 0.0e+00 1080.9 1027 60.5
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1080.9 1043 59.3
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1080.5 1051 58.0
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1079.7 1043 56.1
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 0.0e+00 1078.5 1028 62.0
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 0.0e+00 1077.0 1034 61.5
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 2.8e-311 1072.0 1042 62.7
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 2.0e-309 1065.8 1012 57.9
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.3e-308 1063.1 1011 59.0
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.2e-304 1050.0 1037 55.8
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 1.7e-303 1046.2 1022 60.8
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.4e-302 1043.1 1029 62.6
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 9.2e-302 1040.4 1012 60.3
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 2.0e-301 1039.3 1081 56.3
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 1.8e-297 1026.2 1041 55.9
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 4.0e-297 1025.0 1032 58.3
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 3.4e-296 1021.9 1025 57.6
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.1e-294 1016.9 1364 47.3
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 1.3e-292 1010.0 1042 54.4
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 3.3e-291 1005.4 1063 53.6
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 8.3e-287 990.7 1038 58.3
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 2.4e-286 989.2 1031 57.6
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 3.3e-283 978.8 1067 55.5
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 7.6e-280 967.6 1027 54.2
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.7e-279 966.5 836 66.3
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.1e-273 945.7 853 58.6
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 6.4e-263 911.4 971 53.7
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 2.8e-258 896.0 1019 51.4
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 1.1e-257 894.0 737 63.5
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.4e-254 883.6 1035 50.0
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 7.1e-254 881.3 572 76.7
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 6.0e-253 878.2 559 78.2
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 2.5e-251 872.8 862 55.7
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 6.9e-249 864.8 921 56.2
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 3.8e-247 859.0 1062 50.8
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.4e-241 840.5 741 60.9
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 3.6e-237 825.9 1045 45.4
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.0e-236 824.3 1045 45.3
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.5e-235 820.5 1041 47.3
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 3.2e-214 749.6 537 70.9
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.8e-212 743.8 736 55.6
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 4.4e-211 739.2 500 74.0
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.4e-201 706.8 1044 43.4
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 9.5e-198 694.9 772 59.6
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 4.1e-193 679.5 1019 40.8
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 2.6e-179 633.6 1233 40.1
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 2.6e-179 633.6 621 61.7
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 2.3e-175 620.5 623 58.7
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 3.3e-166 590.1 403 73.7
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 1.9e-158 564.3 403 68.5
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 2.1e-157 560.8 407 68.6
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 5.6e-134 483.0 417 62.8
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 7.9e-112 409.5 511 48.1
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 4.8e-101 373.6 406 52.7
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 3.3e-94 350.9 268 63.8
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 3.1e-92 344.4 224 76.3
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 2.1e-64 251.9 186 66.1
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 1.1e-57 229.6 375 38.1
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.6e-56 225.7 172 66.3
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 2.1e-56 225.3 210 52.4
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.2e-54 219.5 380 47.1
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 5.8e-54 217.2 159 67.3
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 7.5e-54 216.9 195 53.8
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 9.5e-49 199.9 209 54.1
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 5.4e-44 184.1 170 58.2
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.9e-37 161.8 118 70.3
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 1.9e-36 159.1 203 43.8
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 1.3e-34 152.9 95 77.9
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 3.3e-33 148.3 111 67.6
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 7.1e-28 130.6 152 48.7
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 3.0e-26 125.2 188 36.7
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 2.8e-24 118.6 70 87.1
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 9.0e-23 113.6 84 60.7
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 4.5e-22 111.3 104 51.0
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 4.9e-21 107.8 75 72.0
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 3.3e-17 95.1 146 44.5
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 4.3e-17 94.7 113 53.1
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 5.6e-17 94.4 86 52.3
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 1.3e-16 93.2 279 29.7
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 1.3e-16 93.2 279 29.7
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 2.1e-16 92.4 61 72.1
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 2.7e-11 75.5 300 23.7
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.3e-10 73.2 70 51.4
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.8e-10 72.8 45 68.9
AagrBONN_evm.TU.Sc2ySwM_228.5767 Anthoceros agrestis HOM05D003588 ORTHO05D004252 3.0e-10 72.0 66 54.5
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 6.7e-10 70.9 51 68.6
TPR.G213 Trifolium pratense HOM05D003588 ORTHO05D004252 1.5e-09 69.7 36 88.9
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 3.7e-08 65.1 37 81.1
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 8.2e-08 63.9 37 81.1
TAR374G0202 Trochodendron aralioides HOM05D003588 ORTHO05D004252 3.1e-07 62.0 34 79.4
TAR374G0225 Trochodendron aralioides HOM05D003588 ORTHO05D004252 6.9e-07 60.8 34 79.4
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 3.4e-06 58.5 37 73.0


User provided reference genes

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