Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 2.1e-171 605.5 290 100.0
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 2.9e-112 409.1 235 82.1
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 6.5e-112 407.9 235 81.3
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.9e-111 406.4 235 82.1
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.9e-111 406.4 235 80.4
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.9e-111 406.4 235 80.0
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 2.5e-111 406.0 235 80.9
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 7.1e-111 404.4 235 80.4
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.6e-110 403.3 235 79.6
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.7e-110 402.5 235 80.0
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 3.5e-110 402.1 235 79.6
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.5e-110 402.1 235 80.0
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 3.5e-110 402.1 235 79.1
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 6.0e-110 401.4 235 79.1
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 6.0e-110 401.4 235 79.6
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 6.0e-110 401.4 235 80.9
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 7.9e-110 401.0 235 79.1
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.0e-109 400.6 235 79.1
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-109 399.8 235 78.3
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 1.8e-109 399.8 235 79.6
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 3.9e-109 398.7 235 78.7
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 3.9e-109 398.7 235 79.6
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 3.9e-109 398.7 235 78.3
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.9e-109 398.7 235 78.3
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 6.7e-109 397.9 235 78.7
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 1.1e-108 397.1 235 78.3
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-108 396.7 235 77.9
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 1.5e-108 396.7 235 78.7
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.9e-108 396.4 235 78.7
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.9e-108 396.4 235 78.3
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.9e-108 396.4 235 77.9
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.9e-108 396.4 235 77.9
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.5e-108 396.0 235 78.3
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 3.3e-108 395.6 235 78.3
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 4.3e-108 395.2 247 75.7
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 4.3e-108 395.2 237 78.9
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 5.7e-108 394.8 235 78.3
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 5.7e-108 394.8 235 78.3
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 7.4e-108 394.4 235 78.3
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 9.6e-108 394.0 235 77.9
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 9.6e-108 394.0 235 77.4
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.6e-108 394.0 241 76.8
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 9.6e-108 394.0 235 78.3
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.3e-107 393.7 235 78.7
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.3e-107 393.7 235 77.9
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.3e-107 393.7 237 78.9
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-107 393.7 241 76.8
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.3e-107 393.7 235 78.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.6e-107 393.3 237 79.3
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.6e-107 393.3 235 77.9
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.6e-107 393.3 235 77.9
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.1e-107 392.9 235 78.7
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 2.1e-107 392.9 236 77.5
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 2.8e-107 392.5 235 78.7
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 3.7e-107 392.1 235 78.3
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.7e-107 392.1 241 76.3
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 3.7e-107 392.1 251 74.9
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 4.8e-107 391.7 237 78.1
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 4.8e-107 391.7 251 74.5
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 4.8e-107 391.7 236 77.5
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 8.2e-107 391.0 235 78.3
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 8.2e-107 391.0 235 77.4
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.1e-106 390.6 235 78.3
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 4.1e-106 388.7 234 77.4
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 5.3e-106 388.3 235 77.4
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 5.3e-106 388.3 236 77.1
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-105 387.1 235 78.3
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.2e-105 387.1 236 77.1
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.5e-105 386.7 236 77.1
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 2.0e-105 386.3 236 77.5
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 2.0e-105 386.3 236 78.0
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 4.5e-105 385.2 235 76.6
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 5.9e-105 384.8 236 77.5
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 7.6e-105 384.4 240 77.1
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.7e-104 383.3 236 75.0
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.7e-104 383.3 237 75.9
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 2.2e-104 382.9 236 77.1
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.2e-104 382.9 235 75.3
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 2.9e-104 382.5 236 75.8
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 3.8e-104 382.1 234 76.9
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 5.0e-104 381.7 235 76.2
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 5.0e-104 381.7 236 75.4
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 5.0e-104 381.7 236 75.8
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 6.5e-104 381.3 236 74.2
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 1.4e-103 380.2 235 76.2
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 2.5e-103 379.4 236 74.2
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 2.5e-103 379.4 272 70.2
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 2.5e-103 379.4 236 74.2
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 5.5e-103 378.3 236 74.2
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 5.5e-103 378.3 235 74.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.6e-102 376.7 236 73.3
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 2.7e-102 375.9 252 73.0
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.7e-102 375.9 235 74.0
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 3.6e-102 375.6 255 69.4
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.0e-101 374.0 235 74.0
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 3.9e-101 372.1 236 74.2
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 5.1e-101 371.7 238 75.2
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 6.7e-101 371.3 235 74.9
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.9e-100 369.8 237 73.4
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.9e-100 369.8 236 74.6
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 3.3e-100 369.0 235 74.0
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 4.3e-100 368.6 249 71.9
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 3.7e-99 365.5 235 73.6
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 4.8e-99 365.2 236 73.3
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.8e-99 365.2 235 74.5
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.3e-98 361.7 236 71.6
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 5.3e-98 361.7 236 72.9
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 6.9e-98 361.3 236 73.3
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 6.9e-98 361.3 235 73.6
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.5e-97 360.1 236 71.6
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 4.5e-97 358.6 212 78.8
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 5.9e-97 358.2 235 72.3
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.3e-96 357.1 236 71.6
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.9e-96 355.9 236 71.6
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-95 353.6 235 73.2
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.4e-95 353.6 235 71.9
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 2.5e-95 352.8 235 72.3
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 4.2e-95 352.1 210 79.0
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 5.5e-95 351.7 218 77.5
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.1e-94 349.7 236 69.5
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 3.6e-94 349.0 218 74.3
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 6.1e-94 348.2 236 71.6
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-93 347.4 235 71.9
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 2.3e-93 346.3 235 70.2
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 3.0e-93 345.9 241 69.7
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.1e-93 345.1 233 70.0
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.7e-93 344.7 237 70.5
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-91 340.1 237 68.8
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.2e-91 339.7 237 68.8
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.8e-91 338.6 243 66.7
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.4e-90 336.3 236 67.8
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 2.4e-90 336.3 236 66.9
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 4.1e-90 335.5 235 70.2
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.3e-90 335.1 243 66.7
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.9e-90 334.7 237 67.1
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 9.1e-90 334.3 221 73.3
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 9.1e-90 334.3 236 64.8
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-89 334.0 243 66.7
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 2.0e-89 333.2 237 67.1
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-89 333.2 237 67.1
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-89 333.2 237 67.1
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 3.4e-89 332.4 211 75.8
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.7e-88 330.1 235 68.5
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-85 320.1 189 78.8
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.3e-85 319.7 197 76.1
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 5.2e-85 318.5 236 64.0
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 3.3e-84 315.8 236 64.0
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 4.8e-83 312.0 237 62.9
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.1e-82 310.8 237 63.3
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 3.1e-82 309.3 187 77.0
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 7.2e-79 298.1 259 56.0
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.6e-70 270.4 180 73.3
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.7e-68 261.9 252 53.2
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 2.7e-57 226.5 189 57.7
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-55 219.2 130 76.9
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.4e-50 204.1 238 44.5
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.4e-50 204.1 127 74.0
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 8.0e-46 188.3 240 41.7
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 9.2e-42 174.9 109 77.1
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.0e-41 172.2 136 63.2
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.1e-37 161.4 147 58.5
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.4e-34 151.0 107 64.5
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 5.4e-34 149.1 88 80.7
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 1.9e-31 140.6 82 80.5
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.0e-28 130.6 245 34.3
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.6e-28 130.2 76 78.9
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.9e-23 114.0 235 33.6
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 7.6e-20 102.1 67 65.7
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 1.6e-14 84.3 75 57.3
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 6.2e-14 82.4 70 51.4
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 1.8e-13 80.9 65 58.5
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 1.5e-12 77.8 49 71.4
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 1.5e-12 77.8 49 71.4
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.7e-11 74.3 58 56.9
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 1.4e-10 71.2 57 57.9
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 2.4e-10 70.5 57 57.9
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 6.0e-09 65.9 35 82.9
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 4.3e-07 59.7 51 54.9
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 5.6e-07 59.3 74 43.2
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.1e-06 57.4 40 55.0
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 6.2e-06 55.8 35 68.6


User provided reference genes

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