Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 4.8e-88 327.8 163 100.0
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 1.2e-51 206.8 153 62.7
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 6.1e-51 204.5 153 64.1
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 1.0e-50 203.8 157 63.1
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 1.4e-50 203.4 154 63.0
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.4e-50 203.4 153 64.7
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.8e-50 203.0 153 63.4
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 5.2e-50 201.4 154 63.0
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 5.2e-50 201.4 157 65.6
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 5.2e-50 201.4 155 64.5
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 5.2e-50 201.4 153 64.7
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 1.5e-49 199.9 154 63.0
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 1.5e-49 199.9 154 61.7
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 2.0e-49 199.5 153 64.1
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 2.0e-49 199.5 153 61.4
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.6e-49 199.1 155 60.6
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 3.3e-49 198.7 154 64.9
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 3.3e-49 198.7 153 63.4
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 3.3e-49 198.7 153 64.7
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 3.3e-49 198.7 153 64.1
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 5.7e-49 198.0 154 62.3
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 5.7e-49 198.0 149 65.1
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 5.7e-49 198.0 155 63.9
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 7.4e-49 197.6 142 67.6
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 7.4e-49 197.6 153 64.7
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 7.4e-49 197.6 151 63.6
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 7.4e-49 197.6 162 60.5
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 1.7e-48 196.4 154 62.3
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 1.7e-48 196.4 150 66.7
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.2e-48 196.1 154 62.3
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 2.2e-48 196.1 152 62.5
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 2.2e-48 196.1 153 62.1
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 2.2e-48 196.1 153 61.4
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 2.8e-48 195.7 151 62.9
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.8e-48 195.7 153 61.4
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 3.7e-48 195.3 162 63.6
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 4.8e-48 194.9 159 61.0
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 4.8e-48 194.9 153 62.1
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 4.8e-48 194.9 153 63.4
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 6.3e-48 194.5 153 64.1
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 6.3e-48 194.5 153 60.1
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 8.2e-48 194.1 153 64.1
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 8.2e-48 194.1 155 63.9
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 1.1e-47 193.7 149 64.4
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 1.4e-47 193.4 160 62.5
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 1.4e-47 193.4 160 62.5
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 1.4e-47 193.4 149 64.4
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 1.8e-47 193.0 153 60.1
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 1.8e-47 193.0 151 62.3
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 2.4e-47 192.6 141 66.0
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 4.1e-47 191.8 152 61.2
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 5.3e-47 191.4 153 60.1
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 5.3e-47 191.4 153 62.1
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 7.0e-47 191.0 153 60.8
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.2e-46 190.3 153 61.4
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.2e-46 190.3 153 58.2
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.6e-46 189.9 161 58.4
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 2.0e-46 189.5 160 61.9
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.6e-46 189.1 161 60.9
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 2.6e-46 189.1 149 61.1
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.6e-46 189.1 153 58.8
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 3.5e-46 188.7 158 59.5
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 3.5e-46 188.7 158 59.5
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 3.5e-46 188.7 153 60.1
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 3.5e-46 188.7 152 59.2
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 3.5e-46 188.7 154 61.0
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 5.9e-46 188.0 153 58.8
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.0e-45 187.2 152 61.2
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 1.0e-45 187.2 155 60.6
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 1.3e-45 186.8 155 60.0
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 2.2e-45 186.0 154 60.4
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 3.8e-45 185.3 153 57.5
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 5.0e-45 184.9 144 59.7
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.1e-44 183.7 153 57.5
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 1.1e-44 183.7 153 56.9
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 1.5e-44 183.3 154 59.7
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 2.5e-44 182.6 158 58.9
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 2.5e-44 182.6 152 59.9
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 4.2e-44 181.8 149 61.1
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 7.2e-44 181.0 161 57.1
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 1.2e-43 180.3 151 60.3
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 1.6e-43 179.9 141 61.0
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 2.7e-43 179.1 153 58.8
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 6.1e-43 177.9 153 57.5
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 8.0e-43 177.6 153 56.9
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 1.4e-42 176.8 153 56.9
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 6.8e-42 174.5 177 52.0
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 1.2e-41 173.7 153 56.9
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 7.5e-41 171.0 151 52.3
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 9.7e-41 170.6 163 52.1
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 8.3e-40 167.5 149 55.7
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 1.1e-39 167.2 173 52.0
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 1.1e-39 167.2 151 51.7
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 1.4e-39 166.8 137 55.5
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.0e-37 160.6 135 57.0
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 1.5e-36 156.8 158 52.5
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 5.2e-34 148.3 162 46.3
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.5e-33 146.7 157 47.8
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 2.0e-33 146.4 168 47.0
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.7e-33 144.8 135 54.8
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 4.1e-31 138.7 95 65.3
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 9.1e-31 137.5 91 68.1
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 1.5e-28 130.2 90 66.7
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.9e-28 129.8 106 61.3
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 1.2e-27 127.1 105 61.0
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 4.3e-20 102.1 74 59.5
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.3e-18 96.3 79 62.0
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 2.6e-17 92.8 79 60.8
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 2.6e-17 92.8 90 58.9
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 4.4e-17 92.0 79 63.3
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 4.4e-17 92.0 79 63.3
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 1.3e-16 90.5 79 59.5
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 9.2e-15 84.3 72 63.9
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 6.0e-14 81.6 96 43.8
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 8.9e-10 67.8 80 46.2
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 2.0e-09 66.6 139 33.1
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.2e-08 63.2 68 47.1
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 3.2e-07 59.3 48 56.2
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 6.0e-06 55.1 63 46.0


User provided reference genes

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