Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 0.0e+00 1927.9 1035 100.0
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.9e-287 992.3 830 61.6
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 4.9e-287 991.5 834 60.4
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 1.6e-285 986.5 828 61.5
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 5.0e-284 981.5 830 61.0
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 1.9e-283 979.5 820 61.5
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 2.0e-280 969.5 818 61.4
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 3.5e-277 958.7 821 59.7
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 4.6e-277 958.4 823 60.1
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.0e-276 957.2 828 60.4
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 1.0e-276 957.2 847 58.8
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 1.5e-275 953.4 824 60.1
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 1.6e-274 949.9 834 58.6
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 1.6e-274 949.9 823 59.7
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 3.6e-274 948.7 829 59.2
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 1.8e-273 946.4 817 60.0
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 3.1e-273 945.7 846 57.9
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 5.2e-273 944.9 832 58.4
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 2.6e-272 942.6 823 59.2
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 2.6e-272 942.6 833 58.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 3.4e-272 942.2 822 59.4
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 5.8e-272 941.4 805 60.2
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 7.6e-272 941.0 826 58.1
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 7.6e-272 941.0 796 60.6
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 9.9e-272 940.6 822 59.4
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 4.9e-271 938.3 822 59.2
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 6.4e-271 937.9 818 58.8
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 6.4e-271 937.9 821 58.3
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 8.4e-271 937.6 840 57.6
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 1.9e-270 936.4 827 58.3
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 4.1e-270 935.3 838 58.4
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 1.2e-269 933.7 807 59.4
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 1.6e-269 933.3 807 59.5
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 2.1e-269 932.9 796 59.7
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 6.0e-269 931.4 829 58.4
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 1.0e-268 930.6 801 59.7
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 1.3e-268 930.2 857 56.7
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 2.3e-268 929.5 821 58.0
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 2.3e-268 929.5 802 58.6
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 3.0e-268 929.1 802 58.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 3.0e-268 929.1 803 58.9
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 5.1e-268 928.3 856 58.1
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 6.6e-268 927.9 800 59.2
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 1.1e-267 927.2 831 58.0
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 1.5e-267 926.8 829 57.7
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 1.5e-267 926.8 823 57.8
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 1.9e-267 926.4 830 57.2
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 4.3e-267 925.2 818 57.5
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 4.3e-267 925.2 824 58.3
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 5.6e-267 924.9 827 58.5
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 7.3e-267 924.5 827 57.8
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 9.6e-267 924.1 796 59.5
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 2.1e-266 922.9 806 58.7
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 8.1e-266 921.0 799 58.7
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 8.1e-266 921.0 824 58.4
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 1.1e-265 920.6 801 58.7
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 1.4e-265 920.2 835 57.5
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 1.4e-265 920.2 826 58.2
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.8e-265 919.8 803 58.7
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 3.1e-265 919.1 806 59.2
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 5.2e-265 918.3 833 57.5
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 5.2e-265 918.3 830 57.7
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 9.0e-265 917.5 865 56.8
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 1.5e-264 916.8 825 57.1
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.0e-264 916.4 817 58.5
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.4e-264 915.2 832 57.5
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 4.4e-264 915.2 803 58.4
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.7e-263 913.3 824 57.8
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 1.9e-262 909.8 832 57.1
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.4e-262 909.4 826 57.3
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 4.2e-262 908.7 827 57.1
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 1.2e-261 907.1 837 57.2
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 3.5e-261 905.6 853 54.7
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 1.7e-260 903.3 820 56.7
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 1.7e-260 903.3 820 57.1
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 3.0e-260 902.5 813 57.3
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 4.3e-259 898.7 850 56.8
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 4.3e-259 898.7 836 57.1
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 5.6e-259 898.3 840 56.3
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 7.3e-259 897.9 827 56.7
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 1.6e-258 896.7 805 57.5
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.1e-257 894.0 824 57.4
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.4e-257 893.6 829 56.7
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 1.2e-256 890.6 808 55.9
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 2.6e-256 889.4 839 55.5
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 3.4e-256 889.0 847 55.1
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 3.4e-256 889.0 829 56.3
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 7.6e-256 887.9 819 56.7
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 7.6e-256 887.9 806 58.3
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 1.7e-255 886.7 836 54.8
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 3.8e-255 885.6 822 57.4
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.9e-254 883.2 600 72.2
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 9.3e-254 880.9 825 55.6
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.6e-253 880.2 758 59.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 2.1e-253 879.8 845 56.2
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 2.7e-253 879.4 843 54.2
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 4.6e-253 878.6 837 55.1
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 1.3e-252 877.1 822 56.2
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.8e-252 876.7 806 56.2
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 6.7e-252 874.8 819 56.4
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 8.7e-252 874.4 816 55.9
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 1.1e-251 874.0 822 56.1
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 1.9e-251 873.2 825 55.9
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 2.5e-251 872.8 851 54.6
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 3.3e-251 872.5 859 53.7
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 4.3e-251 872.1 824 56.9
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.6e-250 870.2 814 56.1
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 1.6e-250 870.2 831 55.0
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 2.8e-250 869.4 824 55.5
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 5.3e-249 865.1 832 55.4
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 7.6e-248 861.3 832 54.3
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 2.2e-247 859.8 817 54.6
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 1.4e-246 857.1 839 55.2
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.4e-246 856.3 791 57.3
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 4.6e-245 852.0 829 53.6
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 7.9e-245 851.3 827 53.4
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.5e-243 847.0 823 55.0
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.1e-242 843.2 823 55.0
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 2.1e-242 843.2 848 53.2
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.4e-241 840.5 820 52.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 6.9e-241 838.2 817 53.9
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 5.1e-236 822.0 843 53.0
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.9e-235 820.1 822 52.1
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 9.0e-233 811.2 588 66.2
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 2.0e-232 810.1 852 50.9
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.6e-229 800.4 826 51.8
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 4.6e-229 798.9 817 52.9
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.5e-227 793.1 815 51.0
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 7.4e-227 791.6 838 51.6
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.9e-223 779.6 825 50.2
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 6.7e-220 768.5 810 50.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.5e-219 767.3 806 52.4
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.7e-218 763.8 631 60.4
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 5.0e-215 752.3 917 46.3
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 6.5e-215 751.9 811 50.9
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 6.5e-215 751.9 806 48.0
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.4e-214 750.7 807 51.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.6e-213 747.3 803 51.1
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.0e-212 744.6 782 53.5
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 4.5e-208 729.2 812 47.2
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 7.7e-208 728.4 878 47.4
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.7e-207 727.2 828 48.4
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 5.5e-206 722.2 567 60.3
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 7.5e-203 711.8 815 45.6
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.2e-194 683.7 808 47.3
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 2.2e-194 683.7 631 53.4
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 2.9e-154 550.4 636 48.6
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 3.3e-150 537.0 636 47.6
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 9.0e-148 528.9 579 48.9
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 4.2e-145 520.0 531 54.4
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.2e-137 493.4 568 44.9
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 5.3e-132 476.5 795 37.6
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 7.4e-118 429.5 564 40.1
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 3.4e-107 394.0 446 50.0
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.1e-102 379.0 511 42.7
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.6e-99 367.9 460 45.9
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 3.7e-93 347.4 698 32.2
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.6e-91 342.0 401 46.4
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 8.0e-88 329.7 441 44.2
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.9e-81 308.5 264 56.8
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.4e-79 302.4 222 64.9
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 2.9e-66 258.1 559 29.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.9e-65 255.4 264 50.0
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 3.7e-61 241.1 175 63.4
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 2.7e-59 235.0 433 31.4
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.3e-49 201.4 157 61.8
ATR1132G061 Amborella trichopoda HOM05D003973 ORTHO05D062324 2.9e-37 161.8 87 87.4
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 3.3e-25 121.7 221 36.7
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 7.1e-20 104.0 76 59.2
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 3.0e-18 98.6 63 71.4
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 6.9e-15 87.4 74 55.4
ATR1132G068 Amborella trichopoda HOM05D003973 ORTHO05D063668 3.8e-13 81.6 41 95.1
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.6e-11 74.7 122 41.8
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 3.1e-07 62.0 64 48.4


User provided reference genes

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