Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G221 Amborella trichopoda HOM05D007870 ORTHO05D010015 3.0e-17 91.7 84 100.0
Psat4g155360 Pisum sativum HOM05D007870 ORTHO05D010015 1.4e-11 72.8 84 76.2
CDE09G0625 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 3.2e-11 71.6 84 65.5
CDE11G0999 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 3.2e-11 71.6 84 70.2
Nn6g33472 Nelumbo nucifera HOM05D007870 ORTHO05D010015 4.1e-11 71.2 84 77.4
RcHm_v2.0_Chr1g0354641 Rosa chinensis HOM05D007870 ORTHO05D010015 4.1e-11 71.2 84 67.9
Thecc.01G360900 Theobroma cacao HOM05D007870 ORTHO05D010015 5.4e-11 70.9 84 73.8
Lalb_Chr10g0097081 Lupinus albus HOM05D007870 ORTHO05D010015 9.2e-11 70.1 84 72.6
FvH4_7g13990 Fragaria vesca HOM05D007870 ORTHO05D010015 2.1e-10 68.9 84 61.9
vmacro13293 Vaccinium macrocarpon HOM05D007870 ORTHO05D010015 2.1e-10 68.9 84 71.4
vmacro23343 Vaccinium macrocarpon HOM05D007870 ORTHO05D010015 2.1e-10 68.9 84 71.4
arahy.Tifrunner.gnm1.ann1.LLY2P5 Arachis hypogaea HOM05D007870 ORTHO05D010015 3.5e-10 68.2 84 51.2
Duzib138G1310 Durio zibethinus HOM05D007870 ORTHO05D010015 3.5e-10 68.2 84 83.3
Os02g0824400 Oryza sativa ssp. japonica HOM05D007870 ORTHO05D010015 4.6e-10 67.8 84 52.4
Lj3g0023390 Lotus japonicus HOM05D007870 ORTHO05D010015 6.0e-10 67.4 82 78.0
Sopen01g038280 Solanum pennellii HOM05D007870 ORTHO05D010015 7.8e-10 67.0 84 51.2
PGSC0003DMG400000161 Solanum tuberosum HOM05D007870 ORTHO05D010015 7.8e-10 67.0 84 51.2
arahy.Tifrunner.gnm1.ann1.52J70V Arachis hypogaea HOM05D007870 ORTHO05D010015 1.0e-09 66.6 84 50.0
Lalb_Chr04g0256851 Lupinus albus HOM05D007870 ORTHO05D010015 1.0e-09 66.6 84 82.1
TWI23G0891 Tripterygium wilfordii HOM05D007870 ORTHO05D010015 1.0e-09 66.6 84 71.4
unitig_8.g3804 Utricularia gibba HOM05D007870 ORTHO05D010015 1.3e-09 66.2 84 50.0
Zm00001eb190830 Zea mays HOM05D007870 ORTHO05D010015 1.3e-09 66.2 84 64.3
Medtr8g031040 Medicago truncatula HOM05D007870 ORTHO05D010015 1.7e-09 65.9 84 82.1
Dinv43804 Davidia involucrata HOM05D007870 ORTHO05D010015 2.3e-09 65.5 84 61.9
FAN06G1295 Fragaria x ananassa HOM05D007870 ORTHO05D010015 3.0e-09 65.1 84 66.7
Manes.05G036400 Manihot esculenta HOM05D007870 ORTHO05D010015 3.9e-09 64.7 84 77.4
Peaxi162Scf00056g00013 Petunia axillaris HOM05D007870 ORTHO05D010015 3.9e-09 64.7 84 82.1
SGA_v2.0_scaffold4G02333 Striga asiatica HOM05D007870 ORTHO05D010015 5.1e-09 64.3 84 83.3
Aqoxy7G00343 Aquilegia oxysepala HOM05D007870 ORTHO05D010015 6.6e-09 63.9 84 78.6
Cc02_g37830 Coffea canephora HOM05D007870 ORTHO05D010015 6.6e-09 63.9 84 67.9
FAN03G1806 Fragaria x ananassa HOM05D007870 ORTHO05D010015 6.6e-09 63.9 84 69.0
SalBow3G1909 Salvia bowleyana HOM05D007870 ORTHO05D010015 6.6e-09 63.9 84 73.8
DCAR_025186 Daucus carota HOM05D007870 ORTHO05D010015 8.7e-09 63.5 84 47.6
QL08p049047 Quercus lobata HOM05D007870 ORTHO05D010015 8.7e-09 63.5 83 48.2
BolC4t28688H Brassica oleracea HOM05D007870 ORTHO05D010015 1.1e-08 63.2 84 47.6
SalBow1G0457 Salvia bowleyana HOM05D007870 ORTHO05D010015 1.1e-08 63.2 84 81.0
BcaC02g07064 Brassica carinata HOM05D007870 ORTHO05D010015 1.5e-08 62.8 84 61.9
C04p71900 Brassica napus HOM05D007870 ORTHO05D010015 1.5e-08 62.8 84 61.9
Phvul.010G097100 Phaseolus vulgaris HOM05D007870 ORTHO05D010015 1.9e-08 62.4 84 47.6
Thhalv10001707m.g Eutrema salsugineum HOM05D007870 ORTHO05D010015 2.5e-08 62.0 84 47.6
MD01G1056300 Malus domestica HOM05D007870 ORTHO05D010015 2.5e-08 62.0 84 72.6
FAN01G0023 Fragaria x ananassa HOM05D007870 ORTHO05D010015 3.3e-08 61.6 84 69.0
FAN06G2504 Fragaria x ananassa HOM05D007870 ORTHO05D010015 3.3e-08 61.6 84 69.0
TPR.G39935 Trifolium pratense HOM05D007870 ORTHO05D010015 3.3e-08 61.6 84 82.1
BraA04t18871Z Brassica rapa HOM05D007870 ORTHO05D010015 4.3e-08 61.2 84 59.5
AL4G45070 Arabidopsis lyrata HOM05D007870 ORTHO05D010015 5.6e-08 60.8 84 60.7
C04p06780 Brassica napus HOM05D007870 ORTHO05D010015 5.6e-08 60.8 84 67.9
Oeu056365.2 Olea europaea HOM05D007870 ORTHO05D010015 5.6e-08 60.8 111 40.5
Sp4g27930 Schrenkiella parvula HOM05D007870 ORTHO05D010015 5.6e-08 60.8 84 61.9
BcaB02g09002 Brassica carinata HOM05D007870 ORTHO05D010015 7.3e-08 60.5 84 46.4
TAR375G0654 Trochodendron aralioides HOM05D007870 ORTHO05D010015 7.3e-08 60.5 84 79.8
A04p34100 Brassica napus HOM05D007870 ORTHO05D010015 9.6e-08 60.1 84 60.7
Carub.0004s2856 Capsella rubella HOM05D007870 ORTHO05D010015 9.6e-08 60.1 84 46.4
BolC4t22300H Brassica oleracea HOM05D007870 ORTHO05D010015 1.2e-07 59.7 84 51.2
PGR031G0106 Punica granatum HOM05D007870 ORTHO05D010015 1.2e-07 59.7 84 78.6
BcaC02g12172 Brassica carinata HOM05D007870 ORTHO05D010015 2.1e-07 58.9 84 75.0
A05p05830 Brassica napus HOM05D007870 ORTHO05D010015 2.8e-07 58.5 84 58.3
Gorai.004G158100 Gossypium raimondii HOM05D007870 ORTHO05D010015 2.8e-07 58.5 84 81.0
HPP92_014735 Vanilla planifolia HOM05D007870 ORTHO05D010015 2.8e-07 58.5 82 51.2
MELO3C006117.2 Cucumis melo HOM05D007870 ORTHO05D010015 3.6e-07 58.2 84 52.4
Potri.014G082300 Populus trichocarpa HOM05D007870 ORTHO05D010015 4.7e-07 57.8 84 79.8
Actinidia10023 Actinidia chinensis HOM05D007870 ORTHO05D010015 6.2e-07 57.4 80 78.8
MBI18_g40941_MAGBIO Magnolia biondii HOM05D007870 ORTHO05D010015 8.1e-07 57.0 84 81.0
Aa31LG10G15580 Aethionema arabicum HOM05D007870 ORTHO05D010015 1.8e-06 55.8 86 45.3
BraA05t19548Z Brassica rapa HOM05D007870 ORTHO05D010015 1.8e-06 55.8 84 59.5
CANSAT56G4347 Cannabis sativa HOM05D007870 ORTHO05D010015 4.0e-06 54.7 84 78.6
Cpa.g.sc18.241 Carica papaya HOM05D007870 ORTHO05D010015 6.9e-06 53.9 84 78.6


User provided reference genes

Program Settings