Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.5e-129 464.9 228 100.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.6e-68 262.7 204 66.7
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.6e-65 252.3 229 59.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.4e-64 250.4 213 59.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 6.7e-64 248.1 206 64.1
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 2.0e-63 246.5 219 60.3
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.8e-62 242.7 217 59.9
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 4.8e-62 241.9 202 60.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.1e-61 240.7 206 60.7
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.4e-61 239.6 205 62.9
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 3.1e-61 239.2 205 62.4
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 4.1e-61 238.8 223 56.5
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 5.3e-61 238.4 215 61.4
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 7.0e-61 238.0 202 61.4
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 7.0e-61 238.0 205 62.4
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 9.1e-61 237.7 202 60.4
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.5e-60 236.9 206 58.7
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.0e-60 236.5 202 62.9
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.6e-60 236.1 224 56.2
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 3.5e-60 235.7 201 60.2
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 5.9e-60 235.0 202 60.4
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 5.9e-60 235.0 213 57.7
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 5.0e-59 231.9 205 58.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 8.5e-59 231.1 203 60.6
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 8.5e-59 231.1 203 59.6
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.5e-58 230.3 211 58.8
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.9e-58 229.9 204 61.8
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 2.5e-58 229.6 217 56.7
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.5e-58 229.6 211 58.3
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.5e-58 229.6 211 58.3
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.5e-58 229.6 202 61.4
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 4.2e-58 228.8 211 58.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 5.5e-58 228.4 235 54.0
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 7.2e-58 228.0 214 57.5
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 9.4e-58 227.6 217 56.7
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.6e-57 226.9 203 58.6
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.7e-57 226.1 215 55.8
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 8.0e-57 224.6 224 52.7
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.0e-56 224.2 205 59.5
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.0e-56 224.2 206 61.2
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.0e-56 224.2 219 55.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.4e-56 223.8 226 54.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.4e-56 223.8 203 60.1
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 3.0e-56 222.6 205 56.6
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.2e-56 221.9 210 57.1
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 6.7e-56 221.5 203 55.7
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.7e-56 221.5 196 60.7
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 6.7e-56 221.5 205 58.5
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 6.7e-56 221.5 228 53.9
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 8.8e-56 221.1 216 55.1
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 8.8e-56 221.1 204 58.3
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.1e-55 220.7 223 54.7
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.5e-55 220.3 203 57.6
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 2.0e-55 219.9 205 59.5
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 3.3e-55 219.2 193 59.1
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 5.7e-55 218.4 223 54.3
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 7.4e-55 218.0 216 54.6
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 9.7e-55 217.6 203 57.1
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-54 217.2 216 54.6
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.2e-54 216.5 206 56.3
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 2.2e-54 216.5 226 56.2
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 3.7e-54 215.7 206 59.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 6.3e-54 214.9 193 58.5
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 6.3e-54 214.9 237 51.5
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 8.2e-54 214.5 209 56.0
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.4e-53 213.8 214 55.1
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.1e-53 212.6 231 50.6
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 3.1e-53 212.6 201 57.7
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.1e-53 212.2 221 52.5
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.6e-52 210.3 203 58.1
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 1.6e-52 210.3 203 58.1
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.6e-52 210.3 219 53.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 2.0e-52 209.9 211 55.9
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.6e-52 209.5 231 51.1
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 4.5e-52 208.8 216 52.8
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 5.9e-52 208.4 250 46.8
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 7.7e-52 208.0 264 47.3
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.0e-51 207.6 212 53.8
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.7e-51 206.8 207 54.1
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 3.8e-51 205.7 213 51.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 5.0e-51 205.3 217 52.1
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 6.5e-51 204.9 185 59.5
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 8.5e-51 204.5 218 52.3
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.1e-50 204.1 248 49.2
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 4.2e-50 202.2 252 46.0
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 7.2e-50 201.4 238 50.8
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 9.4e-50 201.1 201 56.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 5.2e-48 195.3 206 53.4
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 5.2e-48 195.3 206 53.4
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.2e-47 194.1 235 48.9
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.2e-47 194.1 215 51.2
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.5e-47 193.7 242 47.1
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 2.0e-47 193.4 177 57.1
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.0e-47 193.4 221 51.1
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 2.0e-47 193.4 171 59.1
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.4e-47 192.6 187 54.0
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.2e-46 189.9 219 51.1
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 3.7e-46 189.1 218 51.4
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 8.3e-46 188.0 244 46.3
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 8.3e-46 188.0 244 46.3
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.8e-45 186.8 176 59.1
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.4e-45 186.4 245 45.7
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 4.1e-45 185.7 244 45.9
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 4.1e-45 185.7 244 45.9
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 5.4e-45 185.3 242 47.9
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 5.4e-45 185.3 180 55.0
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 7.0e-45 184.9 173 52.0
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 9.1e-45 184.5 213 50.2
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.2e-44 184.1 186 56.5
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 5.9e-44 181.8 200 52.5
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-43 180.6 218 49.1
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 3.8e-43 179.1 195 51.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 6.5e-43 178.3 177 54.8
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.1e-42 177.6 191 50.3
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 4.2e-42 175.6 208 49.5
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 5.5e-42 175.3 200 52.0
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 7.2e-42 174.9 227 46.7
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.2e-41 174.1 174 52.9
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.2e-41 174.1 209 48.8
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.7e-41 172.9 146 58.2
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.6e-41 172.6 144 59.0
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 8.0e-41 171.4 225 48.0
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-40 170.6 169 50.9
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.3e-40 169.9 230 46.1
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 5.2e-40 168.7 176 52.3
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 8.8e-40 167.9 230 45.7
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.0e-39 166.8 245 43.7
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 5.7e-39 165.2 196 51.0
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 5.7e-39 165.2 232 44.8
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 7.5e-39 164.9 227 45.8
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 2.8e-38 162.9 199 48.7
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.8e-38 162.9 207 47.8
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.8e-37 160.2 197 48.2
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.8e-35 152.5 191 48.2
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.3e-34 149.4 116 60.3
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 8.3e-30 134.8 157 49.0
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.8e-29 133.7 74 77.0
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.6e-28 130.6 246 36.6
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.3e-27 127.5 139 54.7
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 8.6e-27 124.8 138 54.3
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.1e-25 120.2 135 55.6
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 3.6e-25 119.4 166 41.6
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 5.2e-24 115.5 142 52.1
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 3.7e-22 109.4 162 45.7
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-21 107.8 62 74.2
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.4e-21 107.5 86 57.0
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 3.2e-21 106.3 156 44.2
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.2e-21 106.3 137 47.4
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 1.2e-20 104.4 192 37.5
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.2e-20 104.4 154 44.2
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.2e-20 104.4 134 51.5
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.9e-18 97.1 226 35.0
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 7.3e-18 95.1 152 45.4
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.2e-17 94.4 61 63.9
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 4.7e-17 92.4 92 45.7
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.4e-16 90.9 231 34.6
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.4e-16 90.9 121 39.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.4e-13 80.9 94 43.6
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.2e-13 79.7 102 43.1
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 3.5e-12 76.3 97 52.6
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 6.0e-12 75.5 136 40.4
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 8.6e-11 71.6 51 58.8
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.3e-08 63.5 49 59.2
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 4.0e-08 62.8 111 36.9
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 5.2e-08 62.4 99 43.4
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 7.6e-07 58.5 59 49.2
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 3.7e-06 56.2 86 34.9
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 8.4e-06 55.1 34 70.6


User provided reference genes

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