Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.1e-292 1009.2 491 100.0
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 6.4e-104 382.1 529 41.8
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 7.1e-103 378.6 542 41.9
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 3.5e-102 376.3 557 40.0
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.9e-101 372.9 552 42.0
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 3.9e-101 372.9 552 42.0
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 2.8e-99 366.7 524 41.0
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 4.8e-99 365.9 536 40.5
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.4e-98 364.4 508 40.6
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.4e-98 364.4 519 41.4
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.8e-98 364.0 522 40.8
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 2.4e-98 363.6 540 39.6
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 3.1e-98 363.2 544 39.7
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 9.0e-98 361.7 554 40.6
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 1.2e-97 361.3 533 40.3
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 3.4e-97 359.8 507 41.2
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 4.5e-97 359.4 536 40.3
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 5.8e-97 359.0 507 42.0
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.3e-96 357.8 518 40.5
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 2.9e-96 356.7 563 39.4
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 3.8e-96 356.3 516 40.9
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 4.9e-96 355.9 544 38.8
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 8.4e-96 355.1 518 39.4
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.4e-95 354.4 514 40.3
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.9e-95 354.0 525 39.4
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.2e-95 353.2 532 40.4
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.2e-95 353.2 515 40.0
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.2e-95 353.2 515 40.0
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 3.2e-95 353.2 515 41.6
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 9.3e-95 351.7 520 39.6
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 2.1e-94 350.5 520 39.2
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.1e-94 350.5 515 40.2
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 2.7e-94 350.1 513 39.4
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 4.6e-94 349.4 551 37.7
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 7.9e-94 348.6 535 38.5
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 7.9e-94 348.6 521 40.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 1.0e-93 348.2 538 38.8
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.0e-93 348.2 520 39.8
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.9e-93 346.3 562 35.9
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 5.1e-93 345.9 522 39.7
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 8.7e-93 345.1 528 39.8
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 1.5e-92 344.4 516 39.0
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.9e-92 344.0 528 39.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 5.6e-92 342.4 546 39.6
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 5.6e-92 342.4 506 38.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 5.6e-92 342.4 544 37.9
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 7.4e-92 342.0 534 39.0
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 1.6e-91 340.9 518 39.4
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.1e-91 340.5 512 39.1
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.8e-91 339.3 525 39.2
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 4.8e-91 339.3 547 38.9
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.1e-90 338.2 503 39.0
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.4e-90 337.8 517 38.7
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.8e-90 337.4 516 39.3
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 5.3e-90 335.9 550 37.6
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.0e-89 334.0 504 41.1
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 3.4e-89 333.2 545 36.5
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 3.4e-89 333.2 530 39.1
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 4.5e-89 332.8 537 39.1
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.8e-89 332.4 570 36.8
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 5.8e-89 332.4 513 38.0
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 5.8e-89 332.4 537 38.9
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 5.8e-89 332.4 533 37.7
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 7.6e-89 332.0 517 39.1
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.0e-88 331.6 515 39.2
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.7e-88 330.9 512 38.9
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.7e-88 330.9 519 39.1
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.7e-88 330.9 524 38.2
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 3.8e-88 329.7 511 39.1
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 4.9e-88 329.3 512 38.1
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 4.9e-88 329.3 537 37.8
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 6.5e-88 328.9 549 37.7
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.4e-87 327.8 505 37.6
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-87 327.8 518 39.2
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.9e-87 327.4 512 38.5
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.6e-86 324.3 532 36.5
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.5e-86 323.2 480 40.0
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 6.0e-86 322.4 523 38.0
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.0e-85 321.6 543 36.5
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.3e-85 321.2 529 37.4
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.9e-85 319.7 528 37.5
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 5.1e-85 319.3 521 36.7
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 6.7e-85 318.9 520 37.9
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.5e-84 317.8 521 36.5
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 3.3e-84 316.6 527 36.2
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 4.3e-84 316.2 521 36.5
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.7e-84 315.8 497 38.6
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.6e-83 314.3 526 36.1
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 3.7e-83 313.2 520 36.5
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.4e-82 311.2 513 37.0
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.4e-82 311.2 513 37.6
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.4e-82 311.2 547 38.9
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.8e-82 310.8 522 37.2
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 3.1e-82 310.1 521 36.3
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 5.3e-82 309.3 520 37.1
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 6.9e-82 308.9 522 37.0
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 9.0e-82 308.5 501 36.7
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.5e-81 307.8 530 36.4
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 2.6e-81 307.0 527 37.0
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 4.5e-81 306.2 551 34.5
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 4.5e-81 306.2 495 37.2
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.0e-80 305.1 519 36.6
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 2.2e-80 303.9 534 35.0
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.5e-79 300.4 504 35.9
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.2e-79 300.1 547 35.6
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 6.3e-75 285.8 529 35.0
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.1e-74 285.0 527 35.3
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 3.4e-73 280.0 529 36.1
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.7e-72 277.7 525 35.4
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.9e-71 274.2 464 36.6
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.5e-71 273.9 469 37.5
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 4.2e-71 273.1 478 37.7
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-69 266.9 487 35.7
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 6.7e-69 265.8 550 33.1
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.1e-68 265.0 509 36.3
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.1e-68 265.0 490 35.9
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.5e-68 263.8 499 35.5
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.5e-64 248.8 455 33.8
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.5e-64 248.8 455 33.6
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 2.6e-60 237.3 428 33.9
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.3e-60 236.9 489 32.9
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-59 235.0 458 33.4
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.5e-56 222.2 480 31.7
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.2e-55 220.3 505 32.1
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.0e-53 215.3 476 31.3
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.7e-46 190.7 456 30.5
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.8e-45 185.7 450 30.4
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.8e-45 185.7 450 30.4
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.0e-40 172.2 269 38.7
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.3e-40 171.8 512 27.5
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.5e-40 169.1 398 30.7
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.1e-38 164.5 403 30.3
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 6.8e-37 159.5 499 28.5
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.8e-37 159.5 526 26.8
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.8e-34 151.4 427 26.9
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.4e-34 149.8 520 26.0
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.0e-32 145.6 309 33.7
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 6.8e-29 132.9 168 43.5
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.2e-28 132.1 99 58.6
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.2e-25 122.1 144 50.0
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 4.3e-23 113.6 415 24.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.6e-14 85.1 370 24.1
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 4.7e-14 83.6 81 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.8e-13 81.6 130 33.1
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-13 80.5 283 26.9
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.3e-11 75.5 198 27.3
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.1e-09 68.2 67 47.8
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 4.6e-09 67.0 89 38.2
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 3.0e-08 64.3 166 30.7
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 5.1e-08 63.5 188 23.4
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 5.1e-08 63.5 188 23.4
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.5e-07 61.2 86 34.9
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 9.5e-07 59.3 61 39.3
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 9.5e-07 59.3 93 34.4


User provided reference genes

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