Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.3e-122 441.8 234 100.0
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.4e-72 276.2 225 65.3
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 5.4e-16 89.0 220 28.6
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.3e-14 84.3 237 32.1
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.3e-14 84.3 220 30.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.7e-14 84.0 221 29.0
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.9e-14 83.2 221 30.3
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 3.8e-14 82.8 55 63.6
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 6.5e-14 82.0 216 26.4
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 8.6e-14 81.6 235 29.4
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.9e-13 80.5 59 54.2
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.9e-13 80.5 56 55.4
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.5e-13 80.1 59 54.2
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 3.2e-13 79.7 56 57.1
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 4.2e-13 79.3 58 55.2
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 4.2e-13 79.3 218 28.9
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.2e-13 79.3 60 55.0
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 5.5e-13 79.0 217 24.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 7.2e-13 78.6 222 27.5
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 7.2e-13 78.6 54 57.4
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 7.2e-13 78.6 218 27.5
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 7.2e-13 78.6 220 27.7
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 9.5e-13 78.2 220 26.8
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 9.5e-13 78.2 56 55.4
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 9.5e-13 78.2 54 63.0
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 9.5e-13 78.2 232 26.3
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.2e-12 77.8 56 55.4
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.2e-12 77.8 65 49.2
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.6e-12 77.4 232 28.4
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.6e-12 77.4 60 58.3
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 2.1e-12 77.0 54 55.6
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.6e-12 76.3 220 26.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 3.6e-12 76.3 57 59.6
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-12 76.3 57 59.6
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-12 76.3 57 59.6
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-12 76.3 57 59.6
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 4.7e-12 75.9 59 50.8
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 4.7e-12 75.9 229 27.5
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 4.7e-12 75.9 65 55.4
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 4.7e-12 75.9 65 55.4
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 4.7e-12 75.9 65 55.4
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.1e-12 75.5 57 59.6
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.1e-12 75.5 57 59.6
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 6.1e-12 75.5 103 35.0
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 8.0e-12 75.1 55 58.2
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.0e-11 74.7 55 56.4
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.0e-11 74.7 55 58.2
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.4e-11 74.3 55 52.7
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.4e-11 74.3 216 26.4
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.4e-11 74.3 217 30.4
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.4e-11 74.3 55 56.4
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.4e-11 74.3 62 50.0
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 1.8e-11 73.9 60 50.0
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.8e-11 73.9 56 53.6
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 2.3e-11 73.6 216 29.6
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 3.0e-11 73.2 58 53.4
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 3.0e-11 73.2 59 47.5
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 4.0e-11 72.8 63 46.0
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 4.0e-11 72.8 73 46.6
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 4.0e-11 72.8 216 27.8
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 4.0e-11 72.8 53 54.7
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.0e-11 72.8 57 56.1
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 4.0e-11 72.8 60 48.3
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 5.2e-11 72.4 55 52.7
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 5.2e-11 72.4 220 27.3
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.8e-11 72.0 235 26.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 6.8e-11 72.0 55 52.7
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.8e-11 72.0 218 30.7
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 6.8e-11 72.0 64 45.3
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.2e-10 71.2 55 56.4
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.2e-10 71.2 59 49.2
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.5e-10 70.9 221 27.6
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 1.5e-10 70.9 249 29.3
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.5e-10 70.9 217 29.0
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.5e-10 70.9 59 45.8
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.6e-10 70.1 55 52.7
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.6e-10 70.1 55 52.7
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.6e-10 70.1 114 34.2
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 2.6e-10 70.1 57 56.1
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.6e-10 70.1 59 47.5
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 3.4e-10 69.7 57 52.6
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.4e-10 69.7 53 56.6
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 3.4e-10 69.7 61 47.5
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 3.4e-10 69.7 98 37.8
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 3.4e-10 69.7 55 52.7
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.4e-10 69.3 100 37.0
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 4.4e-10 69.3 63 46.0
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 4.4e-10 69.3 261 27.6
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 4.4e-10 69.3 227 28.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 5.7e-10 68.9 217 27.6
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.7e-10 68.9 74 40.5
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 5.7e-10 68.9 221 30.3
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 5.7e-10 68.9 55 50.9
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 5.7e-10 68.9 55 54.5
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.7e-10 68.9 59 45.8
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 9.8e-10 68.2 55 52.7
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 9.8e-10 68.2 224 27.2
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 9.8e-10 68.2 121 35.5
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 9.8e-10 68.2 60 46.7
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 9.8e-10 68.2 94 37.2
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 9.8e-10 68.2 94 37.2
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.2e-09 67.0 235 26.0
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 2.2e-09 67.0 49 51.0
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.2e-09 67.0 60 48.3
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.2e-09 67.0 53 54.7
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.2e-09 67.0 60 45.0
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.8e-09 66.6 220 25.5
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.8e-09 66.6 65 43.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.8e-09 66.6 258 23.6
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.8e-09 66.6 49 51.0
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 3.7e-09 66.2 134 33.6
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 3.7e-09 66.2 104 35.6
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 3.7e-09 66.2 225 26.2
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.9e-09 65.9 78 41.0
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 4.9e-09 65.9 59 40.7
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 6.3e-09 65.5 222 27.0
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 6.3e-09 65.5 222 27.0
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 6.3e-09 65.5 61 45.9
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 6.3e-09 65.5 234 25.2
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 8.3e-09 65.1 65 43.1
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 8.3e-09 65.1 65 43.1
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.1e-08 64.7 220 25.5
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.1e-08 64.7 252 27.4
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.1e-08 64.7 217 26.7
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.4e-08 64.3 65 44.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.4e-08 64.3 220 26.8
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.8e-08 63.9 228 28.5
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.1e-08 63.2 55 45.5
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 4.1e-08 62.8 59 44.1
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.4e-08 62.4 74 37.8
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 5.4e-08 62.4 220 27.3
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.2e-08 61.6 49 57.1
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.2e-07 61.2 229 25.8
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.2e-07 61.2 238 24.8
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.6e-07 60.8 59 40.7
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.7e-07 60.1 222 25.7
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 4.5e-07 59.3 231 28.6
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 5.9e-07 58.9 59 39.0
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 7.8e-07 58.5 51 45.1
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.0e-06 58.2 121 30.6
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.0e-06 58.2 283 23.7
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.3e-06 57.8 242 24.8
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 2.3e-06 57.0 63 47.6
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.8e-06 56.2 283 24.7
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 6.6e-06 55.5 49 42.9


User provided reference genes

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