Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.4e-113 412.9 206 100.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 4.6e-72 275.0 204 65.2
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 2.3e-71 272.7 204 60.8
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 5.1e-71 271.6 204 61.8
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 5.1e-71 271.6 204 63.2
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 5.1e-71 271.6 205 62.9
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 8.7e-71 270.8 205 62.4
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.3e-70 268.5 204 61.8
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 4.3e-70 268.5 205 62.0
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.6e-69 266.5 199 63.3
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.8e-69 265.8 204 61.8
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.7e-69 265.4 204 61.8
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.8e-69 265.0 203 60.1
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 8.2e-69 264.2 204 60.3
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.4e-68 263.5 205 59.5
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.8e-68 263.1 204 58.8
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.8e-68 263.1 205 61.5
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 2.4e-68 262.7 204 59.8
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 3.1e-68 262.3 204 61.3
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 4.1e-68 261.9 204 58.3
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 5.3e-68 261.5 204 58.3
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 9.1e-68 260.8 204 61.3
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.2e-67 260.4 199 60.3
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.5e-67 260.0 204 58.8
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.5e-67 260.0 200 64.5
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 2.0e-67 259.6 203 61.6
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 2.6e-67 259.2 204 58.3
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.5e-67 258.5 204 58.3
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 4.5e-67 258.5 198 63.1
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 5.9e-67 258.1 204 61.3
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 5.9e-67 258.1 204 61.8
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 5.9e-67 258.1 205 59.0
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 7.7e-67 257.7 204 61.3
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.7e-67 257.7 204 61.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 7.7e-67 257.7 202 63.4
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 7.7e-67 257.7 199 59.3
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.0e-66 257.3 199 59.3
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.0e-66 257.3 203 59.6
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.3e-66 256.9 204 60.8
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 1.7e-66 256.5 204 60.3
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.2e-66 256.1 206 59.7
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 2.2e-66 256.1 204 57.4
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.2e-66 256.1 204 60.3
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 2.2e-66 256.1 199 61.8
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.9e-66 255.8 204 58.3
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.9e-66 255.8 204 57.4
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.9e-66 255.8 205 59.0
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.9e-66 255.8 199 61.8
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 3.8e-66 255.4 199 58.8
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 3.8e-66 255.4 199 57.3
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 5.0e-66 255.0 199 58.8
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 5.0e-66 255.0 199 58.8
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 5.0e-66 255.0 199 60.8
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 5.0e-66 255.0 205 59.5
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 6.5e-66 254.6 204 58.8
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 8.5e-66 254.2 199 58.8
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-65 253.8 204 60.3
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.1e-65 253.8 202 58.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.1e-65 253.8 199 59.3
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.9e-65 253.1 199 57.3
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.9e-65 253.1 204 58.3
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 2.5e-65 252.7 207 58.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.5e-65 252.7 199 59.3
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.5e-65 252.7 199 59.3
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.5e-65 252.7 202 57.9
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.2e-65 252.3 199 59.3
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 3.2e-65 252.3 201 60.2
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.2e-65 252.3 199 59.8
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 4.2e-65 251.9 199 58.8
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 4.2e-65 251.9 204 57.8
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 4.2e-65 251.9 199 60.8
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 5.5e-65 251.5 204 59.3
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 5.5e-65 251.5 203 59.6
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 7.2e-65 251.1 199 58.3
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 7.2e-65 251.1 227 53.3
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 9.4e-65 250.8 199 57.8
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 9.4e-65 250.8 199 59.3
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 9.4e-65 250.8 204 58.8
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 9.4e-65 250.8 204 57.4
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.2e-64 250.4 201 57.2
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.2e-64 250.4 203 58.1
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.2e-64 250.4 207 58.9
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.6e-64 250.0 204 57.4
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.6e-64 250.0 203 60.1
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.1e-64 249.6 199 57.8
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 2.1e-64 249.6 199 58.3
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 2.1e-64 249.6 199 58.3
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 2.1e-64 249.6 199 58.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.1e-64 249.6 199 61.8
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 2.7e-64 249.2 199 58.3
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.7e-64 249.2 204 59.8
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 3.6e-64 248.8 199 60.3
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 3.6e-64 248.8 199 60.3
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 4.6e-64 248.4 204 57.8
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 6.1e-64 248.1 196 59.2
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 7.9e-64 247.7 199 57.8
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.0e-63 247.3 199 56.3
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.0e-63 247.3 209 58.9
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.8e-63 246.5 201 58.7
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.8e-63 246.5 199 57.3
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.0e-63 245.7 199 55.3
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.0e-63 245.7 199 55.3
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.1e-62 243.8 199 56.8
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.1e-62 243.8 199 55.8
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.0e-62 243.0 198 59.6
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 5.7e-62 241.5 209 54.5
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.7e-61 240.0 199 56.3
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.8e-61 239.2 200 57.0
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.4e-60 236.9 204 56.9
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 3.1e-60 235.7 201 57.2
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 5.3e-60 235.0 199 56.8
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 5.3e-60 235.0 204 58.3
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.0e-59 233.0 204 55.4
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 4.5e-59 231.9 198 58.1
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 5.9e-59 231.5 203 55.7
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 1.3e-58 230.3 259 46.3
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.2e-58 229.6 204 54.9
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 5.0e-58 228.4 198 56.6
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.0e-55 219.2 191 56.5
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 8.8e-55 217.6 212 51.9
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 4.1e-52 208.8 209 49.3
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.9e-49 199.9 201 49.8
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.8e-44 183.3 152 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 2.7e-43 179.5 202 44.6
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.0e-42 177.6 204 47.1
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.3e-42 177.2 138 61.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.8e-42 175.6 145 58.6
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.5e-41 172.9 141 60.3
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.2e-41 172.6 160 54.4
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 5.5e-41 171.8 148 56.8
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.9e-35 151.8 150 54.7
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 4.7e-32 142.1 123 54.5
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.2e-30 137.5 194 39.7
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.8e-29 132.9 178 43.8
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 8.0e-24 114.8 196 38.3
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 5.2e-23 112.1 126 46.0
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 8.9e-23 111.3 80 63.8
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 7.5e-22 108.2 199 36.2
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.0e-19 100.1 135 43.0
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 2.0e-19 100.1 69 63.8
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.3e-18 97.4 99 44.4
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.8e-16 89.7 64 59.4
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 5.4e-12 75.5 51 58.8
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.6e-11 73.9 70 55.7
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 4.3e-09 65.9 72 41.7
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 1.4e-07 60.8 81 35.8
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.1e-07 59.7 61 49.2
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 8.9e-07 58.2 71 47.9


User provided reference genes

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