Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 2.4e-60 235.3 120 100.0
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 5.7e-14 81.3 107 43.9
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.8e-13 79.0 96 45.8
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 2.8e-13 79.0 119 45.4
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 3.1e-12 75.5 97 44.3
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.2e-11 73.6 116 42.2
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 2.0e-11 72.8 116 39.7
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 2.0e-11 72.8 97 46.4
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 5.9e-11 71.2 81 48.1
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 7.7e-11 70.9 120 39.2
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 2.3e-10 69.3 108 39.8
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 3.8e-10 68.6 111 38.7
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 3.8e-10 68.6 109 37.6
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 1.1e-09 67.0 99 40.4
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.9e-09 66.2 112 38.4
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.3e-09 65.5 99 42.4
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 3.3e-09 65.5 118 37.3
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 3.3e-09 65.5 97 41.2
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 4.2e-09 65.1 98 38.8
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.2e-09 65.1 97 41.2
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.2e-09 65.1 97 41.2
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.2e-09 65.1 116 37.1
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 7.2e-09 64.3 100 41.0
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 7.2e-09 64.3 122 36.1
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 9.5e-09 63.9 103 38.8
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 9.5e-09 63.9 115 39.1
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 9.5e-09 63.9 119 37.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.2e-08 63.5 119 41.2
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 1.2e-08 63.5 98 42.9
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 1.2e-08 63.5 117 35.9
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 1.6e-08 63.2 99 40.4
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.6e-08 63.2 110 38.2
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 1.6e-08 63.2 118 37.3
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 2.1e-08 62.8 103 37.9
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 2.1e-08 62.8 97 40.2
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 2.1e-08 62.8 122 37.7
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 2.1e-08 62.8 120 40.0
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.1e-08 62.8 97 39.2
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 2.8e-08 62.4 97 41.2
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 2.8e-08 62.4 97 40.2
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 2.8e-08 62.4 131 37.4
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 2.8e-08 62.4 101 39.6
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.6e-08 62.0 97 40.2
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 4.7e-08 61.6 99 42.4
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 4.7e-08 61.6 97 39.2
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 8.0e-08 60.8 98 42.9
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 8.0e-08 60.8 55 60.0
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 8.0e-08 60.8 102 39.2
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 8.0e-08 60.8 120 35.8
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 8.0e-08 60.8 98 40.8
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.0e-07 60.5 97 39.2
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 1.0e-07 60.5 118 39.8
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 1.4e-07 60.1 99 40.4
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.4e-07 60.1 98 39.8
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.8e-07 59.7 116 38.8
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.8e-07 59.7 100 40.0
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 2.3e-07 59.3 55 56.4
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 3.0e-07 58.9 56 46.4
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 4.0e-07 58.5 95 43.2
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 4.0e-07 58.5 97 45.4
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 5.2e-07 58.2 97 38.1
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 6.8e-07 57.8 97 35.1
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 6.8e-07 57.8 97 35.1
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 6.8e-07 57.8 56 57.1
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 8.9e-07 57.4 62 48.4
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 8.9e-07 57.4 97 38.1
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.2e-06 57.0 120 35.0
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 1.2e-06 57.0 97 41.2
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.2e-06 57.0 56 55.4
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.2e-06 57.0 56 55.4
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.5e-06 56.6 101 39.6
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 2.0e-06 56.2 125 34.4
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.0e-06 56.2 56 46.4
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 2.0e-06 56.2 113 36.3
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 2.6e-06 55.8 118 35.6
AagrBONN_evm.TU.Sc2ySwM_117.3279 Anthoceros agrestis HOM05D000509 ORTHO05D070400 3.4e-06 55.5 124 37.9
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 3.4e-06 55.5 80 40.0
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 3.4e-06 55.5 80 40.0
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 3.4e-06 55.5 98 44.9
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 3.4e-06 55.5 63 44.4
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 3.4e-06 55.5 72 40.3
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 4.4e-06 55.1 100 37.0
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 4.4e-06 55.1 99 35.4
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.7e-06 54.7 97 45.4
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.7e-06 54.7 97 45.4
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 9.8e-06 53.9 97 38.1
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 9.8e-06 53.9 94 43.6
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 9.8e-06 53.9 121 38.0


User provided reference genes

Program Settings