Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 8.4e-143 510.4 263 100.0
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 8.5e-95 350.9 264 67.4
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.2e-86 322.4 333 53.2
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 4.2e-86 322.0 333 53.8
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 8.8e-84 314.3 332 52.7
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.4e-83 312.0 333 52.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 5.7e-83 311.6 281 60.1
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 5.7e-83 311.6 333 51.7
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.3e-82 310.5 334 52.7
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.7e-82 310.1 333 52.0
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 3.7e-82 308.9 333 53.2
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 5.3e-81 305.1 333 51.4
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 5.3e-81 305.1 335 51.6
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.2e-80 303.9 332 51.2
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.5e-80 302.4 334 51.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.5e-80 302.0 333 51.4
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 5.9e-80 301.6 333 52.0
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 5.9e-80 301.6 332 52.1
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-79 300.4 334 50.9
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-79 300.4 334 50.9
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.3e-79 300.4 330 51.8
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.7e-79 300.1 334 50.9
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.2e-79 299.7 330 50.9
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 2.2e-79 299.7 333 51.1
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 2.2e-79 299.7 334 50.9
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.9e-79 299.3 330 51.8
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.9e-79 299.3 332 51.8
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 3.8e-79 298.9 333 50.5
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 5.0e-79 298.5 336 50.6
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-78 297.0 334 50.3
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.5e-78 297.0 333 51.4
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.9e-78 296.6 329 49.8
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 3.2e-78 295.8 330 50.3
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 4.2e-78 295.4 334 50.0
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.2e-78 295.4 334 50.0
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.2e-78 295.4 332 50.0
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 4.2e-78 295.4 333 49.8
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 5.5e-78 295.0 317 53.0
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 5.5e-78 295.0 333 51.4
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 5.5e-78 295.0 330 51.2
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 7.2e-78 294.7 330 50.0
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 7.2e-78 294.7 334 49.7
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.2e-77 293.9 333 49.2
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.6e-77 293.5 333 50.2
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.6e-77 293.5 331 50.2
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.1e-77 293.1 331 48.6
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.1e-77 293.1 334 50.9
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.7e-77 292.7 331 48.9
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 2.7e-77 292.7 333 50.2
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.6e-77 292.4 332 50.0
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 3.6e-77 292.4 330 49.7
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 6.1e-77 291.6 205 69.8
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.0e-76 290.8 331 51.7
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.0e-76 290.8 333 50.2
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.4e-76 290.4 334 50.0
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.8e-76 290.0 332 49.1
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.8e-76 290.0 333 49.5
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 2.3e-76 289.7 333 49.2
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.3e-76 289.7 330 50.3
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.2e-76 288.5 333 50.5
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 5.2e-76 288.5 334 50.3
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 6.8e-76 288.1 332 50.0
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 6.8e-76 288.1 334 50.6
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 8.8e-76 287.7 334 49.7
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.5e-75 287.0 333 49.8
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 2.0e-75 286.6 331 50.8
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.0e-75 286.6 332 49.1
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 4.4e-75 285.4 335 48.7
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 5.7e-75 285.0 334 48.5
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.5e-75 284.6 332 48.2
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 9.8e-75 284.3 210 67.6
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.3e-74 283.9 336 48.5
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.3e-74 283.9 335 47.5
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 2.2e-74 283.1 332 47.9
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.2e-74 283.1 332 47.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.8e-74 282.7 336 49.1
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.8e-74 282.7 336 49.1
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 3.7e-74 282.3 327 50.8
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.8e-74 282.0 332 47.3
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 8.3e-74 281.2 333 48.9
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-73 280.8 336 48.8
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.1e-73 280.8 336 48.8
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.1e-73 280.8 334 48.5
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.4e-73 280.4 333 48.0
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.4e-73 279.6 328 47.0
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.4e-73 279.6 334 48.5
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 2.4e-73 279.6 334 48.5
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 3.1e-73 279.3 317 49.8
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 4.1e-73 278.9 335 48.7
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.4e-73 278.5 328 49.1
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.4e-73 278.5 332 47.6
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 5.4e-73 278.5 335 47.8
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 5.4e-73 278.5 333 49.2
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 5.4e-73 278.5 333 49.2
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.0e-73 278.1 334 48.2
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.0e-73 278.1 332 47.3
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 7.0e-73 278.1 335 48.1
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 9.1e-73 277.7 332 47.3
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 9.1e-73 277.7 353 45.9
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 9.1e-73 277.7 334 48.5
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.2e-72 277.3 334 48.2
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.6e-72 276.9 353 45.6
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.0e-72 276.6 333 47.7
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 2.7e-72 276.2 333 48.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.7e-72 276.2 333 48.6
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 3.5e-72 275.8 335 49.0
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 7.7e-72 274.6 334 47.6
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 7.7e-72 274.6 336 48.2
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 7.7e-72 274.6 205 68.3
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.7e-71 273.5 330 48.2
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.3e-71 273.1 335 48.7
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 2.3e-71 273.1 337 47.8
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.2e-70 269.2 206 65.0
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 4.4e-67 258.8 334 44.6
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.8e-66 256.1 206 63.1
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.1e-65 252.7 330 44.5
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.0e-63 247.7 320 45.0
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.5e-62 243.0 318 47.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.1e-61 240.0 304 46.4
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 8.0e-61 238.0 351 43.3
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-60 236.9 327 40.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.3e-60 236.5 320 42.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 5.2e-60 235.3 303 45.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-59 233.4 328 40.9
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.6e-59 233.0 318 43.1
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.3e-55 219.9 292 45.9
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-54 217.6 206 59.7
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.6e-51 206.5 301 39.5
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.8e-51 205.3 154 67.5
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.2e-49 199.5 152 68.4
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.0e-48 195.3 170 60.0
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 2.9e-42 176.4 125 72.0
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.1e-40 170.2 149 60.4
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 4.6e-40 169.1 206 42.2
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.1e-39 165.6 195 45.6
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.1e-38 164.5 195 41.5
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.3e-38 162.9 143 60.8
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.0e-36 156.0 201 40.3
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.8e-36 155.2 182 45.1
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.8e-36 155.2 119 65.5
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.9e-34 149.1 168 46.4
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-33 147.1 193 38.9
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-33 146.7 193 38.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.1e-33 145.2 193 36.3
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 4.6e-32 142.5 195 40.5
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.0e-31 139.8 225 34.7
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-30 137.5 193 36.3
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-28 130.6 252 32.5
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.6e-27 125.2 178 35.4
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 5.1e-23 112.5 77 68.8
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.3e-22 109.8 220 32.7
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 7.3e-22 108.6 102 57.8
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-19 101.3 199 33.2
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 9.9e-19 98.2 99 52.5
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-17 93.6 194 32.5
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.2e-17 92.8 196 32.1
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.5e-16 89.7 194 30.9
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.1e-14 84.7 178 32.0
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.3e-14 83.2 182 26.9
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.8e-13 79.3 183 32.8
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-12 77.8 190 28.4
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-11 74.7 174 31.0
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.6e-11 73.6 184 27.7
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.6e-11 73.6 208 28.8
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.5e-11 72.8 72 45.8
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.8e-11 72.4 130 38.5
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.4e-10 68.9 143 32.2
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.4e-10 68.6 149 34.9
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 1.4e-09 67.8 61 60.7
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 3.5e-08 63.2 148 31.8
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-06 58.2 83 42.2


User provided reference genes

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