Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 6.1e-121 438.3 398 100.0
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 8.4e-70 268.5 170 81.2
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 7.1e-69 265.4 170 80.0
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 2.3e-67 260.4 174 77.0
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 3.9e-67 259.6 173 78.0
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 6.6e-67 258.8 170 76.5
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 1.9e-66 257.3 170 78.8
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 4.3e-66 256.1 170 76.5
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.3e-65 254.6 170 77.1
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 1.6e-65 254.2 170 77.1
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 2.8e-65 253.4 169 76.3
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.8e-65 253.4 170 75.3
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 2.8e-65 253.4 169 76.9
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.8e-65 253.4 170 76.5
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 3.6e-65 253.1 170 75.3
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 4.8e-65 252.7 170 75.9
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 4.8e-65 252.7 170 75.3
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 6.2e-65 252.3 174 73.6
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 6.2e-65 252.3 169 77.5
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 8.1e-65 251.9 170 75.9
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 8.1e-65 251.9 167 76.0
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.8e-64 250.8 170 75.9
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 1.8e-64 250.8 170 75.3
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 3.1e-64 250.0 170 74.7
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 5.3e-64 249.2 170 75.9
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 6.9e-64 248.8 170 74.7
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 9.0e-64 248.4 173 75.1
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 9.0e-64 248.4 169 75.7
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 1.2e-63 248.1 170 74.1
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.5e-63 247.7 169 76.3
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 1.5e-63 247.7 170 75.3
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.5e-63 247.7 174 73.6
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 1.5e-63 247.7 170 75.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.0e-63 247.3 170 75.3
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.0e-63 247.3 167 74.9
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 2.0e-63 247.3 169 74.0
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 3.4e-63 246.5 169 74.6
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 3.4e-63 246.5 170 74.1
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 5.8e-63 245.7 170 74.7
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 5.8e-63 245.7 170 74.7
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 5.8e-63 245.7 174 71.8
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 5.8e-63 245.7 174 71.8
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 5.8e-63 245.7 174 73.0
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 9.9e-63 245.0 167 74.3
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.3e-62 244.6 174 71.8
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 1.7e-62 244.2 170 75.3
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 3.8e-62 243.0 170 74.1
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 3.8e-62 243.0 170 74.7
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 6.4e-62 242.3 167 73.7
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 8.4e-62 241.9 170 74.1
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.4e-61 241.1 170 72.9
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 1.9e-61 240.7 174 71.8
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 1.9e-61 240.7 171 73.7
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 3.2e-61 240.0 167 72.5
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 2.1e-60 237.3 166 73.5
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 4.6e-60 236.1 168 73.2
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 4.6e-60 236.1 168 73.2
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.0e-59 235.0 170 71.8
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.5e-58 231.1 169 70.4
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.9e-58 230.7 170 72.9
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.9e-58 230.7 168 71.4
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 1.9e-58 230.7 169 70.4
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.3e-57 228.0 174 66.1
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 4.8e-57 226.1 173 67.1
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 6.2e-57 225.7 163 71.2
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 6.2e-57 225.7 218 60.6
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.8e-56 224.2 174 65.5
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.4e-56 223.8 174 65.5
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.4e-56 223.8 174 65.5
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.4e-56 223.8 174 65.5
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.4e-56 223.8 174 65.5
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.4e-56 223.8 174 65.5
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 3.1e-56 223.4 169 69.2
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 3.1e-56 223.4 174 66.7
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 3.1e-56 223.4 174 66.1
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 5.3e-56 222.6 174 66.7
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 5.3e-56 222.6 174 66.7
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 6.9e-56 222.2 169 69.2
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 2.0e-55 220.7 169 68.6
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 2.6e-55 220.3 170 67.6
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 2.6e-55 220.3 154 72.7
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.7e-54 217.6 206 60.2
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.9e-54 216.9 170 67.1
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 6.5e-54 215.7 173 62.4
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.5e-53 213.8 201 57.7
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 7.1e-53 212.2 201 60.2
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 1.2e-52 211.5 154 70.1
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 6.0e-52 209.1 165 66.1
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 6.0e-52 209.1 149 75.8
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 3.9e-51 206.5 188 59.6
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.9e-50 204.1 150 72.0
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.5e-50 203.8 169 63.9
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 4.3e-50 203.0 150 69.3
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 4.3e-50 203.0 152 71.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 5.7e-50 202.6 150 70.7
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.4e-45 188.0 190 57.9
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.5e-42 177.9 131 65.6
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 9.0e-40 168.7 119 73.1
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.6e-28 131.3 108 64.8
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.6e-28 131.3 108 64.8
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 2.0e-26 124.4 70 81.4
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 9.7e-26 122.1 172 41.9
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 2.2e-25 120.9 93 73.1
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 2.2e-22 110.9 124 53.2
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.2e-22 110.9 65 80.0
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 6.5e-22 109.4 64 76.6
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.9e-21 107.8 66 71.2
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 1.6e-20 104.8 176 35.8
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 2.1e-20 104.4 95 61.1
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.4e-16 90.9 80 68.8
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.1e-16 90.5 80 67.5
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 4.1e-16 90.1 92 62.0
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 2.7e-15 87.4 69 72.5
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.6e-12 78.2 67 61.2
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.0e-12 75.9 64 62.5
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 2.6e-10 70.9 51 78.4
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 4.1e-08 63.5 64 60.9
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 7.0e-08 62.8 40 80.0


User provided reference genes

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