Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.5e-178 629.4 316 100.0
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 1.8e-120 436.4 315 69.8
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.0e-119 433.0 314 70.4
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 4.5e-119 431.8 316 67.7
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.3e-118 430.3 316 66.5
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 6.1e-116 421.4 315 65.7
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 6.8e-115 417.9 312 65.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 9.8e-114 414.1 313 66.5
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 9.8e-114 414.1 311 65.6
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 4.9e-113 411.8 322 64.3
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 8.3e-113 411.0 316 66.5
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.4e-112 410.2 322 64.0
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 1.4e-112 410.2 316 66.5
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.4e-112 410.2 318 63.5
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.9e-112 409.8 318 63.2
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 4.1e-112 408.7 318 64.2
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 5.4e-112 408.3 318 63.8
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 9.2e-112 407.5 318 63.2
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.2e-111 407.1 310 64.5
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.6e-111 406.8 314 64.6
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.0e-111 406.4 316 64.9
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 2.7e-111 406.0 315 64.4
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 4.6e-111 405.2 316 66.1
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 6.0e-111 404.8 315 63.5
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 6.0e-111 404.8 312 64.7
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 7.8e-111 404.4 315 66.3
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-110 404.1 314 63.1
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 1.3e-110 403.7 313 62.9
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.3e-110 403.7 314 64.3
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.7e-110 403.3 312 64.1
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 2.3e-110 402.9 318 63.8
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.3e-110 402.9 333 62.8
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 2.3e-110 402.9 309 64.4
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 3.9e-110 402.1 309 62.1
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.9e-110 402.1 315 62.9
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 5.0e-110 401.7 311 63.3
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 5.0e-110 401.7 310 64.5
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 5.0e-110 401.7 315 65.7
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.6e-110 401.4 314 62.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.6e-110 401.0 314 62.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.1e-109 400.6 314 62.7
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.9e-109 399.8 314 62.4
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.9e-109 399.8 316 62.7
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 3.3e-109 399.1 314 62.7
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.3e-109 399.1 314 62.1
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.3e-109 399.1 310 63.9
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 9.5e-109 397.5 324 61.7
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.1e-108 396.4 317 64.0
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.1e-108 396.4 314 63.4
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 2.1e-108 396.4 313 63.3
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 2.8e-108 396.0 310 62.9
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.6e-108 395.6 314 62.1
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 4.7e-108 395.2 317 61.2
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-107 394.0 324 61.1
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.1e-107 394.0 315 62.2
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.4e-107 393.7 311 62.1
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 3.1e-107 392.5 314 61.1
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 3.1e-107 392.5 348 59.2
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 3.1e-107 392.5 314 61.8
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.2e-107 391.7 314 62.4
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 6.8e-107 391.3 311 64.3
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 6.8e-107 391.3 316 62.3
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.5e-106 390.2 316 61.4
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 2.6e-106 389.4 316 61.1
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 3.4e-106 389.0 313 60.1
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 4.4e-106 388.7 316 61.1
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 4.4e-106 388.7 318 61.6
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 5.8e-106 388.3 315 59.7
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 7.5e-106 387.9 309 61.2
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 9.8e-106 387.5 315 61.3
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 3.7e-105 385.6 312 61.2
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 3.7e-105 385.6 319 62.1
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 4.9e-105 385.2 315 58.7
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 6.4e-105 384.8 322 59.9
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.1e-104 384.0 316 63.3
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.1e-104 384.0 320 60.3
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.9e-104 383.3 341 57.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.4e-104 382.9 314 60.2
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 4.1e-104 382.1 315 62.2
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 9.2e-104 380.9 311 60.8
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.6e-103 380.2 310 60.6
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 4.6e-103 378.6 317 57.4
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 4.6e-103 378.6 367 54.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.0e-102 377.5 315 59.0
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.3e-102 377.1 313 62.6
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 3.0e-102 375.9 313 62.3
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 3.9e-102 375.6 313 61.7
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 6.6e-102 374.8 312 59.6
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.5e-101 373.6 312 61.5
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.8e-99 366.7 325 59.4
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 3.1e-99 365.9 311 60.8
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.2e-98 364.0 277 63.9
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 3.4e-98 362.5 310 58.4
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 4.9e-97 358.6 293 61.4
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.9e-97 358.6 258 66.7
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.9e-96 356.7 282 61.7
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 4.3e-93 345.5 241 69.3
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 7.3e-93 344.7 282 61.0
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 3.6e-92 342.4 310 56.1
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-90 336.7 241 68.0
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 4.4e-90 335.5 277 58.8
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 5.8e-90 335.1 319 54.5
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 2.2e-89 333.2 239 66.9
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-86 323.2 230 67.8
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 7.3e-85 318.2 232 67.7
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.6e-84 317.0 308 53.6
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 4.4e-82 308.9 201 73.6
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-79 299.3 238 62.2
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.2e-76 288.5 235 59.6
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 3.1e-75 286.2 241 59.8
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 4.3e-69 265.8 238 57.1
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 9.6e-69 264.6 241 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.8e-67 260.4 306 47.7
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.2e-57 226.9 187 62.0
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.9e-56 223.8 191 60.2
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.9e-53 213.8 179 59.8
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.4e-51 207.6 321 39.9
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 3.2e-48 196.4 132 68.2
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.6e-47 194.1 309 40.1
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 3.8e-41 172.9 117 72.6
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 4.8e-36 156.0 317 36.0
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.7e-33 147.5 122 57.4
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 8.8e-30 135.2 107 62.6
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-26 124.8 112 50.9
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-26 124.8 112 50.9
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-26 124.8 112 50.9
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.6e-26 123.6 82 68.3
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 3.5e-26 123.2 123 52.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-25 121.3 90 61.1
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 3.0e-22 110.2 123 48.0
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.6e-18 97.8 77 63.6
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.6e-18 97.8 81 63.0
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 6.3e-12 75.9 57 50.9
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 4.1e-11 73.2 57 57.9
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 5.6e-08 62.8 75 42.7


User provided reference genes

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