Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.8e-160 569.3 306 100.0
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 7.1e-85 318.2 244 65.6
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 7.8e-84 314.7 246 65.0
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 7.8e-84 314.7 228 70.2
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 4.0e-80 302.4 244 63.5
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 2.6e-79 299.7 239 61.5
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 3.4e-79 299.3 232 64.7
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 4.5e-79 298.9 234 63.7
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 5.8e-79 298.5 232 65.5
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 7.6e-79 298.1 243 64.2
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 7.6e-79 298.1 231 65.4
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 9.9e-79 297.7 252 62.3
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 9.9e-79 297.7 231 65.8
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 1.3e-78 297.4 228 68.0
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.7e-78 297.0 252 59.1
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.7e-78 297.0 228 66.2
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.9e-78 296.2 228 66.7
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.8e-78 295.8 231 64.1
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 3.8e-78 295.8 227 65.6
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 4.9e-78 295.4 244 62.7
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 6.4e-78 295.0 231 65.8
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 1.1e-77 294.3 263 58.9
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.4e-77 293.1 243 62.1
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 3.2e-77 292.7 235 65.5
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 3.2e-77 292.7 244 61.1
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 4.2e-77 292.4 244 60.7
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 5.4e-77 292.0 244 61.9
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 5.4e-77 292.0 229 65.9
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 7.1e-77 291.6 256 60.5
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 7.1e-77 291.6 231 62.8
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.2e-76 290.8 232 64.2
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.2e-76 290.8 239 62.3
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.6e-76 290.4 223 67.3
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.7e-76 289.7 234 63.7
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 6.0e-76 288.5 230 63.5
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.0e-76 288.5 227 62.6
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 7.9e-76 288.1 246 62.6
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.0e-75 287.7 235 62.6
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.3e-75 287.3 236 62.7
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.3e-75 287.3 245 60.8
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.8e-75 287.0 229 65.5
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 1.8e-75 287.0 235 63.4
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 2.3e-75 286.6 226 63.7
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.3e-75 286.6 252 57.9
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 3.9e-75 285.8 245 59.6
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 5.1e-75 285.4 228 62.7
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 5.1e-75 285.4 229 65.1
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 6.7e-75 285.0 235 61.7
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 8.7e-75 284.6 229 64.6
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.1e-74 284.3 256 60.5
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 1.5e-74 283.9 229 63.3
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 1.9e-74 283.5 233 62.7
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 1.9e-74 283.5 239 59.8
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 2.5e-74 283.1 227 62.1
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 4.3e-74 282.3 248 60.5
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 5.6e-74 282.0 233 63.1
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 7.4e-74 281.6 237 62.4
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 7.4e-74 281.6 230 62.6
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.3e-73 280.8 228 64.0
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.6e-73 280.4 244 60.2
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 2.1e-73 280.0 233 61.8
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 2.1e-73 280.0 246 60.2
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.8e-73 279.6 229 64.6
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 2.8e-73 279.6 247 59.9
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.7e-73 279.3 228 63.6
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 8.1e-73 278.1 245 58.4
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.1e-73 278.1 229 62.9
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 8.1e-73 278.1 257 57.6
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.1e-72 277.7 246 58.9
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 1.1e-72 277.7 246 58.9
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.4e-72 277.3 265 55.5
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 3.1e-72 276.2 230 60.4
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 3.1e-72 276.2 243 58.8
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 3.1e-72 276.2 243 58.8
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 3.1e-72 276.2 248 58.5
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 4.0e-72 275.8 285 54.0
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 5.3e-72 275.4 225 62.7
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.2e-71 274.2 228 62.3
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 2.6e-71 273.1 244 59.4
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 2.6e-71 273.1 230 61.3
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 4.5e-71 272.3 234 60.3
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 1.7e-70 270.4 245 56.3
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.2e-70 270.0 228 61.4
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 2.9e-70 269.6 248 58.1
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.9e-70 269.6 267 55.1
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 3.8e-70 269.2 244 59.8
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 4.9e-70 268.9 243 56.8
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 6.4e-70 268.5 247 59.5
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.1e-69 267.7 231 60.2
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 1.4e-69 267.3 226 60.6
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.9e-69 266.9 227 59.5
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 1.9e-69 266.9 226 61.1
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.2e-69 266.2 254 56.3
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 4.2e-69 265.8 247 58.7
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 7.1e-69 265.0 279 51.3
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.2e-68 264.2 228 61.4
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 1.6e-68 263.8 245 56.3
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 1.3e-67 260.8 211 63.5
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 2.3e-67 260.0 225 59.6
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 6.7e-67 258.5 234 57.7
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 1.1e-66 257.7 217 60.8
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.9e-66 256.9 201 66.7
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.3e-66 255.8 232 57.8
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 4.3e-66 255.8 201 63.2
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 5.7e-66 255.4 256 55.1
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 9.6e-66 254.6 235 55.3
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 1.3e-65 254.2 258 53.5
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 3.7e-65 252.7 240 55.0
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 8.2e-65 251.5 257 51.8
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.4e-64 250.8 237 57.4
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.5e-63 247.3 284 50.0
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.4e-61 240.7 198 61.1
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.6e-60 237.3 228 54.4
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 1.0e-59 234.6 222 54.1
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 5.1e-59 232.3 236 56.4
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 9.7e-58 228.0 231 56.3
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 2.4e-56 223.4 271 48.0
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 3.1e-56 223.0 204 57.4
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.4e-55 219.5 297 45.5
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 5.9e-55 218.8 143 74.8
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.0e-54 218.0 259 49.4
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.3e-54 217.6 194 60.8
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 6.5e-54 215.3 234 52.1
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 1.1e-53 214.5 231 49.8
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.4e-53 214.2 148 70.3
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.6e-52 210.7 236 49.6
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 7.9e-52 208.4 146 70.5
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 7.9e-52 208.4 144 70.8
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.4e-50 201.8 265 44.9
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 8.2e-49 198.4 146 67.1
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 8.2e-49 198.4 233 49.8
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 1.4e-48 197.6 149 63.8
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.0e-43 181.4 249 45.0
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.3e-41 174.5 165 55.8
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.3e-40 169.1 158 53.8
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 7.0e-40 168.7 245 39.6
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.5e-39 166.4 165 51.5
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 2.2e-38 163.7 135 62.2
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.4e-35 154.5 169 49.7
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 5.7e-34 149.1 125 59.2
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 1.7e-33 147.5 215 41.4
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.6e-31 140.2 96 70.8
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 8.8e-27 125.2 97 64.9
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 4.5e-23 112.8 241 35.7
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 2.2e-22 110.5 239 32.6
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.9e-22 110.2 143 47.6
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 6.3e-17 92.4 92 56.5
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 2.4e-16 90.5 82 59.8
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 5.5e-13 79.3 72 58.3
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.0e-08 62.4 61 57.4


User provided reference genes

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