Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 2.9e-225 785.0 432 100.0
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 4.7e-58 229.6 435 37.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 5.7e-56 222.6 436 36.2
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 9.8e-56 221.9 439 37.4
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.8e-54 217.6 441 34.7
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 9.1e-54 215.3 431 36.7
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.3e-52 211.5 435 36.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.4e-49 201.4 444 35.8
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 4.0e-49 199.9 399 35.6
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 5.2e-49 199.5 440 35.5
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.2e-48 198.4 395 34.7
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.0e-48 197.6 443 33.4
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.8e-48 195.3 395 34.2
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-47 194.9 395 36.2
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.3e-47 194.9 436 34.2
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 2.9e-47 193.7 435 34.3
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 4.9e-47 193.0 393 34.6
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 6.3e-47 192.6 444 32.4
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 8.3e-47 192.2 395 33.4
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.4e-46 191.4 398 34.9
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.4e-46 190.7 432 33.6
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 2.4e-46 190.7 432 34.3
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 4.1e-46 189.9 440 33.0
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.0e-46 189.1 398 34.7
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.2e-45 188.3 334 39.5
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.6e-45 188.0 438 32.9
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.6e-45 188.0 377 37.1
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.6e-45 188.0 440 32.3
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.5e-45 186.8 433 33.9
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 1.7e-44 184.5 381 35.4
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 5.0e-44 183.0 433 32.8
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.5e-43 181.4 433 31.6
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.9e-43 181.0 439 33.5
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 5.6e-43 179.5 445 32.4
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 9.5e-43 178.7 434 31.6
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 4.7e-42 176.4 438 32.4
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 6.2e-42 176.0 450 33.1
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.0e-41 175.3 443 31.2
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.0e-41 173.3 442 32.4
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 6.8e-41 172.6 338 36.4
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 8.9e-41 172.2 431 31.6
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.2e-40 171.8 438 30.6
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.5e-40 171.4 433 32.6
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 4.4e-40 169.9 430 30.2
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 4.4e-40 169.9 431 30.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 5.8e-40 169.5 437 31.1
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.7e-39 167.9 398 34.4
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.2e-39 167.5 439 32.1
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.9e-39 167.2 432 31.7
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 2.9e-39 167.2 439 31.4
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 4.9e-39 166.4 439 32.1
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.4e-38 164.9 439 31.9
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.9e-38 164.5 445 30.8
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.4e-38 164.1 398 33.2
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.4e-38 164.1 444 31.3
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.4e-38 164.1 450 29.6
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 5.4e-38 162.9 227 40.1
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 7.0e-38 162.5 394 34.0
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 7.0e-38 162.5 444 29.7
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.2e-37 161.8 435 32.0
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.0e-37 161.0 406 32.3
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 2.7e-37 160.6 394 32.5
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.5e-37 160.2 438 31.7
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 6.0e-37 159.5 373 33.5
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 6.0e-37 159.5 437 31.8
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 7.8e-37 159.1 403 31.5
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.3e-36 158.3 439 31.2
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.7e-36 157.9 390 30.3
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 3.0e-36 157.1 442 31.0
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 3.9e-36 156.8 430 30.9
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 3.9e-36 156.8 234 38.5
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 8.6e-36 155.6 404 30.4
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 8.6e-36 155.6 401 32.2
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.1e-35 155.2 363 36.4
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.1e-35 155.2 231 40.3
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.5e-35 154.8 224 41.1
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.5e-35 154.8 434 32.5
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.9e-35 154.5 399 29.1
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 4.3e-35 153.3 433 28.6
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.6e-35 152.9 441 30.2
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.6e-35 152.9 441 30.2
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 2.1e-34 151.0 431 29.7
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.1e-34 151.0 435 30.6
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 4.7e-34 149.8 235 41.7
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 8.1e-34 149.1 455 28.6
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.4e-33 148.3 437 31.4
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.4e-33 148.3 435 31.0
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.8e-33 147.9 406 32.3
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.1e-33 147.1 448 29.9
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 4.0e-33 146.7 292 35.6
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 5.2e-33 146.4 233 42.9
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 6.8e-33 146.0 434 30.9
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.2e-32 145.2 230 40.4
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 2.0e-32 144.4 233 39.5
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.4e-32 143.7 233 39.5
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 3.4e-32 143.7 439 29.8
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.3e-31 141.7 452 29.9
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-31 141.4 220 38.6
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 4.9e-31 139.8 220 38.6
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 6.4e-31 139.4 388 30.4
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.4e-30 138.3 404 29.5
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 3.2e-30 137.1 225 37.8
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 4.1e-30 136.7 436 29.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 5.4e-30 136.3 415 31.1
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 7.1e-30 136.0 384 31.0
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.2e-29 135.2 227 37.9
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 2.1e-29 134.4 406 30.3
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 2.7e-29 134.0 436 28.9
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.7e-29 134.0 405 29.1
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.0e-28 132.1 406 30.0
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.3e-28 131.0 427 28.6
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.3e-28 131.0 405 29.1
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.0e-28 130.6 405 28.9
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.9e-28 130.2 405 29.1
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 3.3e-27 127.1 226 36.7
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.6e-26 123.6 233 34.3
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 4.7e-26 123.2 170 40.6
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.8e-25 121.3 440 29.1
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 3.1e-25 120.6 228 36.8
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 5.2e-25 119.8 225 34.7
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 9.9e-24 115.5 226 35.4
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 7.1e-22 109.4 232 34.1
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 9.2e-22 109.0 230 35.2
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.2e-21 108.6 229 34.9
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.1e-21 107.8 237 32.1
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 2.1e-21 107.8 360 29.2
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 4.6e-21 106.7 234 32.5
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.6e-18 98.2 404 25.5
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 4.7e-18 96.7 236 30.1
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.2e-16 92.0 302 32.1
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-16 91.7 171 35.1
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 7.6e-16 89.4 405 26.2
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 2.9e-15 87.4 238 31.1
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-14 85.5 160 33.1
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 4.6e-13 80.1 151 33.8
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 4.6e-13 80.1 151 33.8
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.0e-12 79.0 390 27.9
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.3e-12 78.6 153 38.6
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-12 78.6 151 33.1
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.3e-12 78.6 151 33.1
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 5.1e-12 76.6 143 32.9
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.2e-08 65.5 121 38.0
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 2.9e-07 60.8 82 40.2
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 7.1e-06 56.2 69 42.0


User provided reference genes

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