Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G649 Amborella trichopoda HOM05D000681 ORTHO05D067537 8.2e-59 230.7 168 100.0
ATR0824G244 Amborella trichopoda HOM05D000681 ORTHO05D003965 6.7e-45 184.5 168 76.2
SEGI_23091 Sequoiadendron giganteum HOM05D000681 ORTHO05D003965 1.8e-21 106.7 176 45.5
CARHR164450 Cardamine hirsuta HOM05D000681 ORTHO05D003965 5.7e-20 101.7 177 44.1
Aa31sc64G30 Aethionema arabicum HOM05D000681 ORTHO05D003965 1.3e-19 100.5 178 43.3
Nn1g01896 Nelumbo nucifera HOM05D000681 ORTHO05D003965 3.7e-19 99.0 177 42.4
Haze_06454 Corylus avellana HOM05D000681 ORTHO05D003965 8.3e-19 97.8 178 43.8
THA.LOC104799268 Tarenaya hassleriana HOM05D000681 ORTHO05D003965 8.3e-19 97.8 177 42.9
Cfa000465 Carpinus fangiana HOM05D000681 ORTHO05D003965 1.1e-18 97.4 178 43.3
Gohir.A07G119300 Gossypium hirsutum HOM05D000681 ORTHO05D003965 1.1e-18 97.4 175 44.6
Ca_07071_v3 Cicer arietinum L. HOM05D000681 ORTHO05D003965 1.4e-18 97.1 173 49.1
Gorai.001G133500 Gossypium raimondii HOM05D000681 ORTHO05D003965 1.8e-18 96.7 174 43.7
arahy.Tifrunner.gnm1.ann1.5EKU9C Arachis hypogaea HOM05D000681 ORTHO05D003965 2.4e-18 96.3 173 43.4
Gohir.D07G123500 Gossypium hirsutum HOM05D000681 ORTHO05D003965 2.4e-18 96.3 174 43.7
Carub.0005s2116 Capsella rubella HOM05D000681 ORTHO05D003965 4.1e-18 95.5 173 43.4
Peaxi162Scf01038g00013 Petunia axillaris HOM05D000681 ORTHO05D003965 4.1e-18 95.5 175 42.9
Eucgr.J00857 Eucalyptus grandis HOM05D000681 ORTHO05D003965 5.4e-18 95.1 178 41.6
Duzib168G2011 Durio zibethinus HOM05D000681 ORTHO05D003965 7.0e-18 94.7 177 44.6
Nn4g26615 Nelumbo nucifera HOM05D000681 ORTHO05D003965 7.0e-18 94.7 177 42.4
Psat3g190440 Pisum sativum HOM05D000681 ORTHO05D003965 7.0e-18 94.7 172 43.0
Potri.010G254400 Populus trichocarpa HOM05D000681 ORTHO05D003965 7.0e-18 94.7 176 42.0
Ciclev10025010m.g Citrus clementina HOM05D000681 ORTHO05D003965 1.2e-17 94.0 174 40.8
Lj6g0016763 Lotus japonicus HOM05D000681 ORTHO05D003965 1.2e-17 94.0 172 42.4
Potri.008G003300 Populus trichocarpa HOM05D000681 ORTHO05D003965 1.2e-17 94.0 175 41.1
TAR626G1049 Trochodendron aralioides HOM05D000681 ORTHO05D003965 1.6e-17 93.6 177 43.5
COL.COLO4_10268 Corchorus olitorius HOM05D000681 ORTHO05D003965 2.0e-17 93.2 183 41.5
Phvul.006G220700 Phaseolus vulgaris HOM05D000681 ORTHO05D003965 3.5e-17 92.4 173 45.1
Sp5g07890 Schrenkiella parvula HOM05D000681 ORTHO05D003965 3.5e-17 92.4 174 41.4
GSVIVG01034906001 Vitis vinifera HOM05D000681 ORTHO05D003965 3.5e-17 92.4 177 45.2
PGR004G2448 Punica granatum HOM05D000681 ORTHO05D003965 4.5e-17 92.0 184 39.1
QL06p040389 Quercus lobata HOM05D000681 ORTHO05D003965 4.5e-17 92.0 166 42.8
QL06p040433 Quercus lobata HOM05D000681 ORTHO05D003965 5.9e-17 91.7 166 42.8
VMungo0540G2156 Vigna mungo HOM05D000681 ORTHO05D003965 1.3e-16 90.5 173 42.8
Prupe.1G200300 Prunus persica HOM05D000681 ORTHO05D003965 1.7e-16 90.1 172 40.1
arahy.Tifrunner.gnm1.ann1.00G2U6 Arachis hypogaea HOM05D000681 ORTHO05D003965 2.3e-16 89.7 173 41.0
AL5G35620 Arabidopsis lyrata HOM05D000681 ORTHO05D003965 2.9e-16 89.4 173 40.5
arahy.Tifrunner.gnm1.ann1.TJ4XJK Arachis hypogaea HOM05D000681 ORTHO05D003965 2.9e-16 89.4 173 41.0
Cfa000462 Carpinus fangiana HOM05D000681 ORTHO05D003965 2.9e-16 89.4 175 40.6
CiPaw.11G000800 Carya illinoinensis HOM05D000681 ORTHO05D003965 2.9e-16 89.4 178 41.0
AT3G54540 Arabidopsis thaliana HOM05D000681 ORTHO05D003965 3.8e-16 89.0 173 41.0
Glyma.17G112700 Glycine max HOM05D000681 ORTHO05D003965 3.8e-16 89.0 173 45.1
MSTRG.3455 Avicennia marina HOM05D000681 ORTHO05D003965 5.0e-16 88.6 177 40.7
Glyma.13G158600 Glycine max HOM05D000681 ORTHO05D003965 5.0e-16 88.6 173 45.1
CANSAT56G2029 Cannabis sativa HOM05D000681 ORTHO05D003965 6.6e-16 88.2 175 41.7
Sabra10G0197800 Salix brachista HOM05D000681 ORTHO05D003965 6.6e-16 88.2 172 40.7
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 8.6e-16 87.8 177 41.8
Haze_06455 Corylus avellana HOM05D000681 ORTHO05D003965 1.1e-15 87.4 175 40.0
Sc12g0009140 Simmondsia chinensis HOM05D000681 ORTHO05D003965 1.5e-15 87.0 174 42.0
Aqoxy1G03333 Aquilegia oxysepala HOM05D000681 ORTHO05D003965 1.9e-15 86.7 177 41.2
LjContig00201_ERROPOS200000g0027847 Lotus japonicus HOM05D000681 ORTHO05D003965 1.9e-15 86.7 172 45.9
SalBow4G1633 Salvia bowleyana HOM05D000681 ORTHO05D003965 1.9e-15 86.7 175 38.9
PGSC0003DMG400019392 Solanum tuberosum HOM05D000681 ORTHO05D003965 2.5e-15 86.3 175 39.4
arahy.Tifrunner.gnm1.ann1.3GP07U Arachis hypogaea HOM05D000681 ORTHO05D003965 4.3e-15 85.5 173 39.9
RcHm_v2.0_Chr6g0306241 Rosa chinensis HOM05D000681 ORTHO05D003965 4.3e-15 85.5 171 40.9
arahy.Tifrunner.gnm1.ann1.J4K9CJ Arachis hypogaea HOM05D000681 ORTHO05D003965 5.6e-15 85.1 173 39.9
CSS0043828 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D003965 5.6e-15 85.1 178 41.6
arahy.Tifrunner.gnm1.ann1.H8I0GA Arachis hypogaea HOM05D000681 ORTHO05D003965 7.3e-15 84.7 173 39.9
vmacro01678 Vaccinium macrocarpon HOM05D000681 ORTHO05D003965 7.3e-15 84.7 178 40.4
TPR.G4545 Trifolium pratense HOM05D000681 ORTHO05D003965 9.5e-15 84.3 172 40.7
Manes.11G051400 Manihot esculenta HOM05D000681 ORTHO05D003965 1.6e-14 83.6 172 37.8
PSO782G5048 Papaver somniferum HOM05D000681 ORTHO05D003965 1.6e-14 83.6 176 40.3
RcHm_v2.0_Chr2g0149831 Rosa chinensis HOM05D000681 ORTHO05D003965 1.6e-14 83.6 173 41.6
Cpa.g.sc103.76 Carica papaya HOM05D000681 ORTHO05D003965 2.1e-14 83.2 178 38.8
Ah.02g119750 Amaranthus hybridus HOM05D000681 ORTHO05D003965 3.6e-14 82.4 180 38.9
Cc07_g06650 Coffea canephora HOM05D000681 ORTHO05D003965 3.6e-14 82.4 182 40.7
unitig_32.g10772 Utricularia gibba HOM05D000681 ORTHO05D003965 3.6e-14 82.4 172 37.2
Dinv25483 Davidia involucrata HOM05D000681 ORTHO05D003965 6.1e-14 81.6 178 39.9
CDE02G0208 Ceratophyllum demersum HOM05D000681 ORTHO05D003965 8.0e-14 81.3 172 41.9
Sc12g0009030 Simmondsia chinensis HOM05D000681 ORTHO05D003965 8.0e-14 81.3 174 40.8
Atru.chr1.3219 Acer truncatum HOM05D000681 ORTHO05D003965 1.0e-13 80.9 183 37.7
Ah.12g056530 Amaranthus hybridus HOM05D000681 ORTHO05D003965 1.0e-13 80.9 179 39.1
Lj5C63T16 Lonicera japonica HOM05D000681 ORTHO05D003965 1.0e-13 80.9 173 46.2
vmacro08459 Vaccinium macrocarpon HOM05D000681 ORTHO05D003965 1.0e-13 80.9 176 42.0
Atru.chr11.46 Acer truncatum HOM05D000681 ORTHO05D003965 1.4e-13 80.5 174 41.4
PSO302G0112 Papaver somniferum HOM05D000681 ORTHO05D003965 1.4e-13 80.5 176 47.2
HPP92_016893 Vanilla planifolia HOM05D000681 ORTHO05D003965 1.4e-13 80.5 182 40.1
HPP92_016895 Vanilla planifolia HOM05D000681 ORTHO05D003965 1.4e-13 80.5 182 40.1
BcaB01g00181 Brassica carinata HOM05D000681 ORTHO05D003965 1.8e-13 80.1 189 37.6
EL10Ac5g10535 Beta vulgaris HOM05D000681 ORTHO05D003965 2.3e-13 79.7 177 40.7
Migut.L00191 Erythranthe guttata HOM05D000681 ORTHO05D003965 2.3e-13 79.7 183 38.8
Lalb_Chr18g0061111 Lupinus albus HOM05D000681 ORTHO05D003965 2.3e-13 79.7 173 39.9
MBI19_g09305_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D003965 2.3e-13 79.7 174 38.5
Sed0003208 Sechium edule HOM05D000681 ORTHO05D003965 3.0e-13 79.3 177 39.0
TAR628G1397 Trochodendron aralioides HOM05D000681 ORTHO05D003965 3.0e-13 79.3 176 39.2
TWI15G0954 Tripterygium wilfordii HOM05D000681 ORTHO05D003965 4.0e-13 79.0 173 39.3
CsaV3_4G029060 Cucumis sativus L. HOM05D000681 ORTHO05D003965 6.8e-13 78.2 177 39.0
Rhsim11G0117700 Rhododendron simsii HOM05D000681 ORTHO05D003965 6.8e-13 78.2 107 46.7
Gohir.D09G107040 Gossypium hirsutum HOM05D000681 ORTHO05D003965 8.9e-13 77.8 172 40.1
Gorai.006G124600 Gossypium raimondii HOM05D000681 ORTHO05D003965 8.9e-13 77.8 172 40.1
Lsat_1_v5_gn_3_33421 Lactuca sativa HOM05D000681 ORTHO05D003965 1.2e-12 77.4 178 38.8
Manes.04G121000 Manihot esculenta HOM05D000681 ORTHO05D003965 2.0e-12 76.6 172 38.4
PSO170G5940 Papaver somniferum HOM05D000681 ORTHO05D003965 2.0e-12 76.6 177 37.3
ClCG04G005070 Citrullus lanatus HOM05D000681 ORTHO05D003965 2.6e-12 76.3 177 38.4
MELO3C024756.2 Cucumis melo HOM05D000681 ORTHO05D003965 2.6e-12 76.3 177 38.4
CsaV3_2G035850 Cucumis sativus L. HOM05D000681 ORTHO05D003965 2.6e-12 76.3 177 38.4
AUR62016426 Chenopodium quinoa HOM05D000681 ORTHO05D003965 4.4e-12 75.5 172 43.6
Nitab4.5_0000617g0230 Nicotiana tabacum HOM05D000681 ORTHO05D003965 5.7e-12 75.1 175 38.3
PSO170G2892 Papaver somniferum HOM05D000681 ORTHO05D003965 5.7e-12 75.1 176 45.5
ClCG06G001150 Citrullus lanatus HOM05D000681 ORTHO05D003965 7.5e-12 74.7 176 36.9
HanXRQChr08g0214551 Helianthus annuus HOM05D000681 ORTHO05D003965 7.5e-12 74.7 176 47.2
Thecc.09G247600 Theobroma cacao HOM05D000681 ORTHO05D003965 7.5e-12 74.7 178 39.3
FAN02G1366 Fragaria x ananassa HOM05D000681 ORTHO05D003965 1.3e-11 73.9 174 39.1
Solyc07g008610.3 Solanum lycopersicum HOM05D000681 ORTHO05D003965 1.3e-11 73.9 146 39.7
AUR62005971 Chenopodium quinoa HOM05D000681 ORTHO05D003965 1.7e-11 73.6 172 38.4
AUR62028099 Chenopodium quinoa HOM05D000681 ORTHO05D003965 2.2e-11 73.2 172 38.4
FAN05G3783 Fragaria x ananassa HOM05D000681 ORTHO05D003965 2.2e-11 73.2 174 39.1
FvH4_6g37180 Fragaria vesca HOM05D000681 ORTHO05D003965 6.4e-11 71.6 174 37.9
FAN09G2067 Fragaria x ananassa HOM05D000681 ORTHO05D003965 6.4e-11 71.6 174 37.9
FAN14G4608 Fragaria x ananassa HOM05D000681 ORTHO05D003965 6.4e-11 71.6 174 37.9
ECA233G4280 Erigeron canadensis HOM05D000681 ORTHO05D003965 8.3e-11 71.2 183 37.2
FvH4_2g35540 Fragaria vesca HOM05D000681 ORTHO05D003965 1.4e-10 70.5 171 41.5
Nitab4.5_0000164g0210 Nicotiana tabacum HOM05D000681 ORTHO05D003965 1.4e-10 70.5 175 36.6
A09p47510 Brassica napus HOM05D000681 ORTHO05D003965 2.4e-10 69.7 186 35.5
BraA09t40208Z Brassica rapa HOM05D000681 ORTHO05D003965 2.4e-10 69.7 186 35.5
Sed0014486 Sechium edule HOM05D000681 ORTHO05D003965 3.2e-10 69.3 176 36.4
Thhalv10010156m.g Eutrema salsugineum HOM05D000681 ORTHO05D003965 5.4e-10 68.6 183 41.0
Duzib150G0498 Durio zibethinus HOM05D000681 ORTHO05D003965 7.0e-10 68.2 145 40.7
FAN27G1163 Fragaria x ananassa HOM05D000681 ORTHO05D003965 1.2e-09 67.4 171 40.9
Mapoly0122s0045 Marchantia polymorpha HOM05D000681 ORTHO05D003965 1.2e-09 67.4 180 37.2
MD00G1070400 Malus domestica HOM05D000681 ORTHO05D003965 2.0e-09 66.6 138 39.1
Sopen07g004550 Solanum pennellii HOM05D000681 ORTHO05D003965 2.0e-09 66.6 113 42.5
PGSC0003DMG400022987 Solanum tuberosum HOM05D000681 ORTHO05D003965 2.0e-09 66.6 113 43.4
BcaC07g39811 Brassica carinata HOM05D000681 ORTHO05D003965 2.7e-09 66.2 176 43.2
C08p29720 Brassica napus HOM05D000681 ORTHO05D003965 2.7e-09 66.2 176 43.2
BolC8t50581H Brassica oleracea HOM05D000681 ORTHO05D003965 2.7e-09 66.2 176 43.2
Lj3g0001657 Lotus japonicus HOM05D000681 ORTHO05D003965 4.6e-09 65.5 168 39.9
Sopen10g005950 Solanum pennellii HOM05D000681 ORTHO05D003965 4.6e-09 65.5 175 35.4
Actinidia00148 Actinidia chinensis HOM05D000681 ORTHO05D003965 5.9e-09 65.1 147 37.4
Lj3g0001760 Lotus japonicus HOM05D000681 ORTHO05D003965 5.9e-09 65.1 169 39.1
Gohir.A09G110551 Gossypium hirsutum HOM05D000681 ORTHO05D003965 7.8e-09 64.7 138 39.1
Lsat_1_v5_gn_0_441 Lactuca sativa HOM05D000681 ORTHO05D003965 1.7e-08 63.5 169 36.7
Hma1.2p1_0660F.1_g197670 Hydrangea macrophylla HOM05D000681 ORTHO05D003965 2.3e-08 63.2 108 44.4
Nitab4.5_0012588g0010 Nicotiana tabacum HOM05D000681 ORTHO05D003965 2.3e-08 63.2 175 36.6
AL5G35610 Arabidopsis lyrata HOM05D000681 ORTHO05D003965 3.9e-08 62.4 160 36.2
SHI21176 Sapria himalayana HOM05D000681 ORTHO05D003965 1.5e-07 60.5 180 34.4
CAN.G541.40 Capsicum annuum HOM05D000681 ORTHO05D003965 2.5e-07 59.7 176 35.2
AL3G43140 Arabidopsis lyrata HOM05D000681 ORTHO05D003965 4.3e-07 58.9 171 31.6
Actinidia11737 Actinidia chinensis HOM05D000681 ORTHO05D019444 9.5e-07 57.8 81 48.1
SMO171G0073 Selaginella moellendorffii HOM05D000681 ORTHO05D003965 9.5e-07 57.8 171 36.3
Dinv12811 Davidia involucrata HOM05D000681 ORTHO05D019444 6.2e-06 55.1 155 32.9
Psat4g094360 Pisum sativum HOM05D000681 ORTHO05D003965 6.2e-06 55.1 180 38.9


User provided reference genes

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