Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 3.3e-286 987.6 486 100.0
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 7.4e-270 933.3 485 93.4
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 8.8e-263 909.8 484 91.5
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 4.3e-262 907.5 483 90.5
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 2.2e-261 905.2 483 90.5
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.7e-261 904.4 483 90.1
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 4.8e-261 904.0 483 90.1
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.8e-261 904.0 483 90.1
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 6.3e-261 903.7 483 89.4
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.1e-260 902.9 483 89.4
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.4e-260 902.5 483 90.7
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.8e-260 902.1 483 90.1
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-260 902.1 483 90.9
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 3.1e-260 901.4 483 90.1
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.1e-260 901.0 483 90.1
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.3e-260 900.6 483 89.6
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 6.9e-260 900.2 483 89.6
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.9e-260 900.2 485 89.7
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 6.9e-260 900.2 483 89.9
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 9.1e-260 899.8 483 89.6
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 9.1e-260 899.8 483 89.6
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.0e-259 898.7 483 88.0
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.6e-259 898.3 459 93.9
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 2.6e-259 898.3 483 90.7
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 3.4e-259 897.9 483 90.5
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.4e-259 897.9 473 91.1
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.4e-259 897.9 483 90.3
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 4.5e-259 897.5 483 89.6
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.9e-259 897.1 484 89.7
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 7.7e-259 896.7 482 90.7
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 1.0e-258 896.3 482 90.7
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.0e-258 896.3 483 89.4
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.0e-258 896.3 483 90.3
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.3e-258 896.0 483 90.5
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.3e-258 896.0 484 89.9
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.7e-258 895.6 484 89.5
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.7e-258 895.6 483 89.2
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.7e-258 895.6 484 89.3
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.7e-258 895.6 482 90.0
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.7e-258 895.6 483 89.6
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 2.2e-258 895.2 483 89.6
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 2.2e-258 895.2 484 89.3
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.9e-258 894.8 483 88.4
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.8e-258 894.4 484 88.8
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 3.8e-258 894.4 483 89.4
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 3.8e-258 894.4 484 89.0
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 3.8e-258 894.4 484 89.0
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 5.0e-258 894.0 481 89.6
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 6.5e-258 893.6 484 89.9
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 6.5e-258 893.6 484 88.8
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 8.5e-258 893.3 483 90.1
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 8.5e-258 893.3 483 89.2
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-257 892.9 483 90.1
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.1e-257 892.9 483 90.1
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.1e-257 892.9 483 89.9
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.1e-257 892.9 483 89.9
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.1e-257 892.9 481 89.2
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.4e-257 892.5 483 90.1
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.4e-257 892.5 484 89.0
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.9e-257 892.1 482 88.8
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.9e-257 892.1 483 90.1
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.9e-257 892.1 481 89.8
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 2.5e-257 891.7 483 89.9
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.5e-257 891.7 483 88.2
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 2.5e-257 891.7 481 90.2
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 3.2e-257 891.3 483 89.9
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 3.2e-257 891.3 481 89.4
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 4.2e-257 891.0 483 90.1
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 5.5e-257 890.6 483 89.0
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 7.2e-257 890.2 467 92.5
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 7.2e-257 890.2 483 90.1
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 7.2e-257 890.2 488 89.3
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 9.4e-257 889.8 482 89.0
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 2.1e-256 888.6 484 88.4
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 2.1e-256 888.6 476 91.6
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.7e-256 888.3 484 89.7
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 3.6e-256 887.9 485 89.7
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 3.6e-256 887.9 483 89.0
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 3.6e-256 887.9 485 88.5
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 4.7e-256 887.5 483 89.4
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 4.7e-256 887.5 478 89.1
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 6.1e-256 887.1 483 88.8
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 6.1e-256 887.1 484 89.0
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 7.9e-256 886.7 477 89.7
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.4e-255 885.9 481 88.6
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.4e-255 885.9 483 88.8
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 1.8e-255 885.6 465 92.3
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 2.3e-255 885.2 484 89.7
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 2.3e-255 885.2 484 88.8
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 2.3e-255 885.2 465 92.3
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 3.9e-255 884.4 490 88.4
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 5.1e-255 884.0 482 88.6
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 2.0e-254 882.1 482 88.2
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.0e-254 882.1 481 88.4
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.0e-254 882.1 484 88.6
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.6e-254 881.7 485 88.9
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 3.3e-254 881.3 483 88.4
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 5.7e-254 880.6 482 87.6
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 9.7e-254 879.8 477 89.1
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.3e-253 879.4 485 88.7
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.3e-253 879.4 484 88.0
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.8e-253 878.2 484 87.8
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.4e-252 875.9 484 88.6
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.4e-252 875.9 473 89.2
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 3.1e-252 874.8 451 92.7
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 5.3e-252 874.0 452 92.7
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 8.5e-250 866.7 483 88.0
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 2.6e-246 855.1 457 91.2
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 7.5e-246 853.6 460 89.8
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.8e-245 851.7 466 88.8
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 2.7e-243 845.1 480 82.9
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 7.7e-243 843.6 471 87.9
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 8.5e-242 840.1 439 90.4
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 3.0e-239 831.6 492 83.1
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 3.4e-238 828.2 432 88.7
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.8e-236 822.4 407 94.8
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 3.1e-236 821.6 406 95.6
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 5.4e-236 820.8 431 87.9
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.2e-235 819.7 405 95.6
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 1.6e-235 819.3 407 93.9
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 9.4e-233 810.1 408 92.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 9.2e-228 793.5 429 86.2
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 5.6e-225 784.3 485 80.2
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 7.5e-222 773.9 385 95.1
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 1.0e-218 763.5 427 82.2
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 5.0e-218 761.1 421 82.4
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.2e-216 756.5 458 80.6
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 6.2e-208 727.6 392 88.8
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 3.3e-201 705.3 480 74.8
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.7e-200 701.4 390 86.9
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.4e-188 663.3 346 91.0
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 6.6e-186 654.4 366 86.6
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 4.0e-183 645.2 395 74.7
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 7.4e-177 624.4 316 93.4
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.7e-173 613.2 483 67.1
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.4e-165 584.3 483 64.8
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.2e-164 582.4 483 64.6
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.2e-164 582.0 483 65.0
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.6e-163 580.1 331 87.0
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-146 523.5 279 88.5
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 9.4e-140 501.1 351 72.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 5.0e-125 452.2 276 74.6
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.0e-114 416.4 203 96.1
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.0e-97 360.5 177 92.7
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.4e-95 353.6 222 77.9
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.9e-92 344.0 173 93.6
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.5e-89 334.3 170 92.4
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.4e-80 302.4 484 40.7
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 8.1e-75 285.4 146 92.5
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 5.1e-69 266.2 161 85.7
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 3.3e-68 263.5 146 86.3
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 6.4e-64 249.2 128 92.2
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.9e-63 247.7 127 89.0
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 2.4e-55 220.7 144 79.9
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 8.7e-53 212.2 254 44.1
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 5.6e-52 209.5 100 95.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.5e-49 199.9 102 91.2
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 8.7e-45 185.7 124 76.6
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 9.7e-36 155.6 102 76.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 2.4e-34 151.0 76 92.1
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 2.4e-34 151.0 76 92.1
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.8e-29 134.8 105 62.9
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 1.1e-28 132.1 197 37.1
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 2.6e-28 131.0 68 91.2
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.4e-28 129.4 70 85.7
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-27 126.7 65 92.3
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-27 126.7 65 92.3
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.8e-26 124.8 68 83.8
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.3e-24 118.6 65 83.1
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.9e-24 117.5 65 81.5
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.0e-21 109.0 65 80.0
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 6.7e-21 106.3 67 68.7
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.1e-20 105.5 67 71.6
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.0e-13 82.4 168 33.9
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 1.8e-13 81.6 71 59.2
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 3.3e-12 77.4 72 55.6
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 7.5e-12 76.3 72 55.6
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 7.0e-10 69.7 61 60.7
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 1.6e-06 58.5 40 67.5


User provided reference genes

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