Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 5.0e-151 537.7 271 100.0
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.3e-93 344.7 232 72.8
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 6.3e-93 344.7 232 73.7
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 9.1e-92 340.9 235 71.5
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.3e-90 337.0 229 72.1
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 7.2e-89 331.3 257 63.8
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-88 329.7 257 63.4
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.7e-88 329.3 235 68.9
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.0e-87 327.4 228 70.6
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.0e-87 327.4 232 69.4
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.8e-87 326.6 234 69.7
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 5.1e-87 325.1 232 68.1
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 5.1e-87 325.1 232 68.5
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 2.0e-86 323.2 230 69.6
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 2.0e-86 323.2 230 69.6
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 5.7e-86 321.6 231 67.5
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.3e-85 320.5 230 68.3
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.7e-85 320.1 229 68.6
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.7e-85 320.1 232 69.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.2e-85 319.7 232 67.7
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.8e-84 316.6 241 65.6
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 3.1e-84 315.8 232 67.7
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 4.1e-84 315.5 229 67.2
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 4.1e-84 315.5 232 67.2
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 4.1e-84 315.5 230 67.0
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 9.1e-84 314.3 228 67.1
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 9.1e-84 314.3 239 64.9
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.5e-83 313.5 230 66.1
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.0e-83 313.2 230 67.0
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.4e-83 312.4 233 65.2
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 3.4e-83 312.4 236 63.1
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 5.9e-83 311.6 235 64.3
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 7.7e-83 311.2 241 64.7
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.3e-82 310.5 233 64.8
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.3e-82 310.5 234 64.1
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.7e-82 310.1 244 62.3
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 2.2e-82 309.7 244 66.0
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.2e-82 309.7 276 59.8
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.9e-82 309.3 237 63.7
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 5.0e-82 308.5 243 65.4
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 5.0e-82 308.5 232 65.1
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 5.0e-82 308.5 237 64.6
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.1e-81 307.4 228 65.4
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.1e-81 307.4 233 66.1
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.4e-81 307.0 231 64.5
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.9e-81 306.6 235 63.8
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 1.9e-81 306.6 241 63.5
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.5e-81 306.2 230 64.8
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.1e-80 303.1 232 65.9
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.6e-80 302.4 238 66.8
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.4e-79 300.4 260 60.8
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.4e-79 300.4 229 63.3
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.4e-79 300.4 226 62.4
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 5.2e-79 298.5 243 60.5
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 6.7e-79 298.1 256 59.4
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 6.7e-79 298.1 230 63.5
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.5e-78 297.0 256 58.2
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 3.3e-78 295.8 269 56.9
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-78 295.4 219 66.2
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 5.7e-78 295.0 226 62.4
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.7e-77 293.5 243 60.5
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 3.7e-77 292.4 227 60.8
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.1e-76 290.8 243 60.1
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.4e-76 290.4 243 61.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.8e-76 290.0 272 54.8
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 3.1e-76 289.3 248 59.3
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 3.1e-76 289.3 248 59.3
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 5.3e-76 288.5 256 57.4
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 7.0e-76 288.1 243 59.7
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.6e-75 287.0 227 60.4
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.0e-75 286.6 227 60.4
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.5e-75 285.8 206 68.4
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 5.9e-75 285.0 227 59.9
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 7.7e-75 284.6 242 58.3
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.7e-74 283.5 232 57.3
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 3.8e-74 282.3 273 56.0
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.0e-74 282.0 237 59.9
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.5e-73 279.6 237 59.5
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.0e-71 274.2 230 59.6
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.0e-71 272.7 230 59.1
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 5.2e-71 271.9 240 55.8
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 4.4e-70 268.9 224 60.3
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.7e-69 266.9 187 67.9
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.2e-69 266.5 198 66.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 6.3e-69 265.0 198 66.7
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 3.1e-68 262.7 232 57.3
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.7e-66 256.9 183 69.9
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 6.5e-66 255.0 186 66.7
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.7e-64 249.6 246 53.3
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 3.0e-63 246.1 245 51.0
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.2e-63 245.4 187 63.1
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 8.8e-63 244.6 224 55.4
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.5e-62 243.8 226 54.9
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.6e-62 243.0 230 53.0
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.3e-61 240.7 245 52.7
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-61 239.6 181 64.1
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 2.8e-61 239.6 248 51.2
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.0e-58 231.1 200 58.0
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 8.6e-58 228.0 217 54.8
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 5.2e-55 218.8 221 52.0
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-50 204.5 218 51.4
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.9e-49 200.3 124 79.0
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-48 196.8 236 49.6
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.4e-47 194.1 160 64.4
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 3.3e-41 172.9 122 68.9
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.0e-39 166.0 161 53.4
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 2.9e-37 159.8 140 55.0
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.2e-35 154.5 224 38.4
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-33 146.4 139 51.8
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.2e-32 142.1 250 38.0
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 8.3e-29 131.7 109 55.0
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-28 129.8 103 58.3
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.2e-27 127.9 125 52.0
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.6e-26 121.7 116 53.4
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.4e-23 113.6 110 53.6
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-20 104.0 90 54.4
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.4e-20 103.6 74 64.9
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-20 103.6 71 71.8
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 7.1e-20 102.1 86 54.7
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-19 100.9 122 46.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-18 98.2 99 50.5
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 8.7e-18 95.1 91 49.5
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-17 93.6 88 53.4
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 5.6e-17 92.4 82 54.9
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 8.1e-16 88.6 93 51.6
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 2.4e-15 87.0 95 47.4
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.3e-13 81.3 71 53.5
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-10 69.7 70 52.9
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-09 67.0 135 33.3
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.3e-08 64.7 66 47.0
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.8e-08 63.5 135 31.9
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 2.8e-08 63.5 47 59.6
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 2.8e-08 63.5 47 59.6
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.9e-07 58.9 98 41.8
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 9.0e-07 58.5 48 54.2
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 9.0e-07 58.5 48 54.2
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-06 58.2 49 51.0
Gohir.A08G135300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 5.8e-06 55.8 120 34.2
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 9.9e-06 55.1 52 59.6


User provided reference genes

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