Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G577 Amborella trichopoda HOM05D007595 ORTHO05D009570 1.8e-90 337.8 243 100.0
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 2.0e-25 121.7 218 64.2
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 3.6e-19 100.9 211 60.7
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 4.4e-17 94.0 210 59.0
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 6.0e-14 83.6 73 49.3
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 6.0e-14 83.6 102 49.0
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 6.6e-13 80.1 102 52.0
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 6.6e-13 80.1 128 51.6
Sabra14G0039700 Salix brachista HOM05D007595 ORTHO05D009570 6.6e-13 80.1 192 60.9
MD07G1093100 Malus domestica HOM05D007595 ORTHO05D009570 8.6e-13 79.7 102 37.3
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 1.9e-12 78.6 71 46.5
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 2.5e-12 78.2 102 37.3
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 4.3e-12 77.4 71 47.9
Zm00001eb367370 Zea mays HOM05D011046 ORTHO05D013342 4.3e-12 77.4 102 51.0
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 7.3e-12 76.6 69 47.8
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 9.5e-12 76.3 102 52.0
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.6e-11 75.5 138 30.4
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 2.8e-11 74.7 227 53.7
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 4.7e-11 73.9 104 38.5
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 4.7e-11 73.9 102 35.3
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 8.1e-11 73.2 106 36.8
Cpa.g.sc52.75 Carica papaya HOM05D007595 ORTHO05D009570 1.1e-10 72.8 79 43.0
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 1.8e-10 72.0 102 34.3
FAN18G0104 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.8e-10 72.0 102 34.3
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 4.0e-10 70.9 73 41.1
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 4.0e-10 70.9 102 49.0
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 4.0e-10 70.9 69 46.4
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 1.5e-09 68.9 107 50.5
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 1.5e-09 68.9 74 41.9
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 3.4e-09 67.8 69 43.5
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 5.8e-09 67.0 100 34.0
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 5.8e-09 67.0 100 34.0
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 7.5e-09 66.6 86 37.2
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 7.5e-09 66.6 69 42.0
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 2.2e-08 65.1 100 49.0
Os10g0147250 Oryza sativa ssp. japonica HOM05D011046 ORTHO05D013342 2.2e-08 65.1 69 46.4
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 2.2e-08 65.1 113 48.7
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 2.9e-08 64.7 102 45.1
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 2.9e-08 64.7 102 45.1
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 3.7e-08 64.3 70 40.0
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 4.9e-08 63.9 122 40.2
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 4.9e-08 63.9 102 49.0
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 4.9e-08 63.9 102 49.0
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 6.4e-08 63.5 73 41.1
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 6.4e-08 63.5 110 30.0
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 8.3e-08 63.2 70 42.9
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 1.4e-07 62.4 69 42.0
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 1.4e-07 62.4 69 42.0
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 1.9e-07 62.0 100 47.0
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 3.2e-07 61.2 69 40.6
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 3.2e-07 61.2 100 46.0
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 4.1e-07 60.8 83 37.3
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 4.1e-07 60.8 73 38.4
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 5.4e-07 60.5 103 51.5
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 7.1e-07 60.1 69 37.7
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 9.2e-07 59.7 74 32.4
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 9.2e-07 59.7 69 39.1
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 1.2e-06 59.3 69 40.6
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 1.6e-06 58.9 71 39.4
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 1.6e-06 58.9 69 33.3
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 1.6e-06 58.9 69 37.7
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 1.6e-06 58.9 103 48.5
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 2.1e-06 58.5 69 40.6
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 3.5e-06 57.8 70 31.4
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 6.0e-06 57.0 102 45.1
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 6.0e-06 57.0 69 36.2
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 7.8e-06 56.6 106 42.5
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 7.8e-06 56.6 168 64.3
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 7.8e-06 56.6 74 33.8


User provided reference genes

Program Settings