Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 2.2e-88 328.9 167 100.0
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.6e-43 179.9 129 72.9
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 3.7e-43 178.7 130 71.5
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.7e-43 178.7 129 72.9
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.1e-42 177.2 141 67.4
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 1.4e-42 176.8 129 72.1
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.8e-42 176.4 129 71.3
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.8e-42 176.4 129 72.1
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 2.4e-42 176.0 130 70.8
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 3.1e-42 175.6 129 70.5
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 3.1e-42 175.6 129 68.2
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.1e-42 175.6 134 65.7
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 4.1e-42 175.3 129 71.3
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 4.1e-42 175.3 129 70.5
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 4.1e-42 175.3 129 69.8
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 4.1e-42 175.3 130 70.0
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 4.1e-42 175.3 128 71.1
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 5.3e-42 174.9 129 71.3
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 5.3e-42 174.9 129 71.3
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 6.9e-42 174.5 129 70.5
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 6.9e-42 174.5 129 70.5
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 9.0e-42 174.1 130 70.8
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 9.0e-42 174.1 129 71.3
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.2e-41 173.7 129 70.5
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.2e-41 173.7 129 70.5
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.2e-41 173.7 129 71.3
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.5e-41 173.3 129 70.5
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 1.5e-41 173.3 129 70.5
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 1.5e-41 173.3 129 70.5
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 1.5e-41 173.3 129 69.8
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 1.5e-41 173.3 129 69.0
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 1.5e-41 173.3 129 69.0
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-41 172.9 129 68.2
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 2.0e-41 172.9 129 70.5
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 2.0e-41 172.9 129 69.8
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 2.0e-41 172.9 129 70.5
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.6e-41 172.6 129 70.5
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.4e-41 172.2 129 68.2
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 3.4e-41 172.2 129 69.0
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 4.5e-41 171.8 129 68.2
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 4.5e-41 171.8 129 69.0
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 4.5e-41 171.8 129 69.0
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 4.5e-41 171.8 129 67.4
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 5.9e-41 171.4 129 68.2
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 5.9e-41 171.4 129 68.2
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 7.6e-41 171.0 129 67.4
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 7.6e-41 171.0 129 68.2
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 7.6e-41 171.0 114 74.6
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 7.6e-41 171.0 129 69.0
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 7.6e-41 171.0 111 77.5
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.7e-40 169.9 111 74.8
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.7e-40 169.9 129 69.0
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 1.7e-40 169.9 129 67.4
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.7e-40 169.9 111 75.7
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 1.7e-40 169.9 115 73.9
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 2.2e-40 169.5 126 69.8
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 3.8e-40 168.7 115 72.2
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 5.0e-40 168.3 128 68.0
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 5.0e-40 168.3 129 67.4
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 6.5e-40 167.9 130 68.5
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 6.5e-40 167.9 111 75.7
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 8.5e-40 167.5 92 91.3
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 8.5e-40 167.5 115 70.4
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 8.5e-40 167.5 111 74.8
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 8.5e-40 167.5 129 65.9
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 1.1e-39 167.2 129 68.2
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 1.1e-39 167.2 129 68.2
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 1.1e-39 167.2 129 68.2
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 1.1e-39 167.2 130 68.5
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 1.1e-39 167.2 111 74.8
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 1.4e-39 166.8 115 70.4
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 1.9e-39 166.4 130 67.7
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.9e-39 166.4 114 71.9
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 1.9e-39 166.4 130 67.7
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 2.5e-39 166.0 129 68.2
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 2.5e-39 166.0 130 66.2
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 3.2e-39 165.6 111 74.8
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 3.2e-39 165.6 129 65.9
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 5.5e-39 164.9 130 67.7
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 9.3e-39 164.1 116 70.7
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 1.2e-38 163.7 117 67.5
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.2e-38 163.7 115 69.6
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.2e-38 163.7 117 68.4
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 1.6e-38 163.3 115 69.6
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 2.1e-38 162.9 130 64.6
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 2.1e-38 162.9 115 68.7
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 3.6e-38 162.2 111 72.1
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 3.6e-38 162.2 129 65.1
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 6.1e-38 161.4 111 73.0
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 6.1e-38 161.4 111 73.0
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 7.9e-38 161.0 129 65.1
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 1.0e-37 160.6 115 69.6
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 1.0e-37 160.6 129 64.3
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 1.4e-37 160.2 129 64.3
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 1.4e-37 160.2 129 63.6
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 1.8e-37 159.8 130 65.4
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 2.3e-37 159.5 115 68.7
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 2.3e-37 159.5 115 68.7
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 2.3e-37 159.5 129 64.3
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 2.3e-37 159.5 129 63.6
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 3.0e-37 159.1 145 58.6
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 3.0e-37 159.1 111 71.2
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.7e-37 157.9 119 68.1
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 6.7e-37 157.9 111 68.5
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 8.8e-37 157.5 129 62.8
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 1.1e-36 157.1 129 62.8
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 1.5e-36 156.8 149 58.4
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 3.3e-36 155.6 129 63.6
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 6.3e-35 151.4 111 67.6
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.8e-34 149.8 129 59.7
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.4e-34 149.4 111 65.8
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 2.4e-34 149.4 129 62.0
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 6.9e-34 147.9 115 65.2
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 7.7e-33 144.4 124 60.5
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.3e-32 143.7 116 62.9
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.7e-32 143.3 108 67.6
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 6.5e-32 141.4 133 56.4
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 8.5e-32 141.0 131 59.5
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.5e-31 139.4 106 65.1
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 2.5e-31 139.4 116 58.6
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 5.5e-31 138.3 104 66.3
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 1.0e-29 134.0 111 56.8
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 3.0e-29 132.5 111 63.1
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 1.5e-28 130.2 92 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 4.8e-27 125.2 100 57.0
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-26 124.0 95 66.3
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.1e-26 122.5 94 66.0
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 5.3e-26 121.7 95 65.3
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 6.9e-26 121.3 95 65.3
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.0e-24 117.5 83 67.5
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 1.7e-24 116.7 143 46.9
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 1.4e-23 113.6 141 46.8
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 1.4e-21 107.1 114 47.4
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 4.4e-20 102.1 88 62.5
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.8e-11 72.8 56 66.1
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 3.6e-06 55.8 49 49.0


User provided reference genes

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