Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 7.6e-244 846.7 406 100.0
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 2.5e-101 373.2 331 58.6
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 3.2e-101 372.9 331 57.4
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.4e-99 367.5 280 66.4
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 6.3e-97 358.6 328 54.9
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 5.0e-94 349.0 336 55.7
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 5.0e-94 349.0 272 64.3
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.4e-93 347.4 294 59.9
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 5.5e-93 345.5 336 56.5
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.6e-92 344.0 273 64.8
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 2.7e-92 343.2 309 57.6
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 3.6e-92 342.8 275 62.9
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 3.6e-92 342.8 275 63.3
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.0e-91 341.3 275 64.0
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.0e-91 341.3 338 53.8
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.8e-91 340.5 275 63.6
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 1.8e-91 340.5 334 53.9
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.8e-91 340.5 334 53.9
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 3.0e-91 339.7 275 63.3
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 3.9e-91 339.3 349 53.9
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 3.9e-91 339.3 296 60.5
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.5e-90 337.4 275 63.6
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 2.6e-90 336.7 276 63.0
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 4.4e-90 335.9 277 62.1
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 7.4e-90 335.1 275 63.6
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 7.4e-90 335.1 275 62.5
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.3e-89 334.3 343 53.1
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 1.7e-89 334.0 306 55.6
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.2e-89 333.6 250 65.2
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 2.8e-89 333.2 312 57.1
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 2.8e-89 333.2 317 56.2
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 2.8e-89 333.2 274 60.9
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 6.3e-89 332.0 275 60.4
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 6.3e-89 332.0 279 60.6
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 6.3e-89 332.0 307 58.6
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 8.2e-89 331.6 320 57.2
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.4e-88 330.9 279 61.3
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 3.1e-88 329.7 275 58.9
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 3.1e-88 329.7 336 55.1
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 4.1e-88 329.3 273 60.4
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 4.1e-88 329.3 254 65.0
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 7.0e-88 328.6 273 61.2
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.2e-87 327.8 275 61.5
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.6e-87 327.4 290 60.3
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 1.6e-87 327.4 264 61.4
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.6e-87 327.4 250 64.4
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 2.0e-87 327.0 276 62.0
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.0e-87 327.0 291 59.8
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 2.0e-87 327.0 291 57.7
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.6e-87 326.6 293 58.7
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.0e-86 324.7 274 59.5
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.0e-86 324.7 277 59.9
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.0e-86 324.7 274 59.5
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.3e-86 324.3 271 60.5
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.7e-86 323.9 275 61.5
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 1.7e-86 323.9 317 56.8
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.7e-86 323.9 310 56.1
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.2e-86 323.6 285 59.3
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 2.9e-86 323.2 275 60.4
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.9e-86 323.2 288 57.6
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.8e-86 322.8 308 56.2
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 3.8e-86 322.8 275 61.1
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 6.5e-86 322.0 273 60.8
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 8.5e-86 321.6 350 52.3
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 1.1e-85 321.2 336 53.6
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.1e-85 321.2 280 60.4
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.9e-85 320.5 273 60.1
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 2.5e-85 320.1 275 60.0
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 5.5e-85 318.9 276 59.4
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 7.2e-85 318.5 279 58.1
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 1.2e-84 317.8 271 60.1
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.6e-84 317.4 271 57.6
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 2.1e-84 317.0 276 59.1
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 2.7e-84 316.6 276 59.4
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 2.7e-84 316.6 276 60.5
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 3.6e-84 316.2 274 57.7
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 3.6e-84 316.2 280 57.9
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 4.7e-84 315.8 271 59.4
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 4.7e-84 315.8 342 53.2
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.0e-83 314.7 276 58.7
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.4e-83 314.3 308 52.6
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.8e-83 313.9 272 59.2
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 3.0e-83 313.2 274 59.9
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 3.0e-83 313.2 284 58.5
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.0e-83 312.8 288 57.3
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 5.2e-83 312.4 281 58.7
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 6.7e-83 312.0 271 59.4
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 3.3e-82 309.7 273 59.0
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 3.3e-82 309.7 273 59.0
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 3.3e-82 309.7 254 64.2
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 5.7e-82 308.9 272 56.6
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 1.3e-81 307.8 270 58.5
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.7e-81 307.4 273 57.1
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.7e-81 307.4 318 52.5
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.8e-81 306.6 275 56.4
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 2.8e-81 306.6 313 52.1
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.1e-80 304.7 273 58.2
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 1.1e-80 304.7 273 58.2
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.4e-80 304.3 271 59.0
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 9.1e-80 301.6 228 66.2
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.3e-78 297.7 273 59.0
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.1e-77 294.7 276 57.2
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 9.4e-77 291.6 311 51.8
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.6e-76 290.8 233 61.8
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 2.7e-76 290.0 276 55.4
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.8e-75 287.3 259 57.5
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 2.3e-75 287.0 272 56.2
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 7.5e-74 282.0 239 59.8
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 3.7e-73 279.6 347 47.8
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.1e-72 276.2 279 53.0
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 9.1e-72 275.0 365 43.8
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 1.1e-69 268.1 243 58.4
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 5.2e-67 259.2 229 57.6
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 9.8e-66 255.0 262 49.2
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 6.6e-62 242.3 229 52.8
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 2.5e-61 240.4 147 76.2
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 8.0e-60 235.3 189 59.8
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 5.8e-58 229.2 226 50.4
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 3.9e-46 189.9 267 41.6
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 9.5e-45 185.3 262 44.3
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 6.4e-41 172.6 149 57.0
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 6.4e-33 146.0 138 54.3
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.1e-31 141.0 174 45.4
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 1.2e-26 125.2 336 29.2
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 4.2e-16 90.1 93 53.8
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 9.3e-16 89.0 52 80.8
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 2.4e-11 74.3 43 81.4
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 3.4e-10 70.5 84 44.0
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 6.7e-06 56.2 52 55.8


User provided reference genes

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