Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 1.2e-140 503.4 306 100.0
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 9.3e-85 317.8 303 63.7
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 9.6e-82 307.8 308 59.4
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 3.1e-80 302.8 337 58.2
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 2.0e-79 300.1 330 57.3
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 5.8e-79 298.5 300 59.7
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 9.9e-79 297.7 306 58.8
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 9.9e-79 297.7 310 59.0
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 1.3e-78 297.4 306 58.8
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 1.7e-78 297.0 309 57.3
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 2.9e-78 296.2 344 54.9
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 4.9e-78 295.4 323 57.6
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 4.2e-77 292.4 300 57.7
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 4.2e-77 292.4 306 52.6
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 9.3e-77 291.2 318 55.7
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 9.3e-77 291.2 314 58.9
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 9.3e-77 291.2 305 58.7
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 1.2e-76 290.8 313 58.1
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.6e-76 290.4 302 57.9
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 2.1e-76 290.0 303 55.1
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 2.1e-76 290.0 331 56.5
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.7e-76 289.7 313 56.9
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.7e-76 289.7 316 56.3
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 3.5e-76 289.3 306 57.8
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 3.5e-76 289.3 316 58.5
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 1.0e-75 287.7 322 58.7
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.0e-75 287.7 328 54.0
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 1.3e-75 287.3 304 58.6
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 1.8e-75 287.0 306 56.9
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 1.8e-75 287.0 318 56.3
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.9e-75 285.8 323 56.3
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 6.7e-75 285.0 313 56.9
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 6.7e-75 285.0 304 53.6
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 1.1e-74 284.3 313 57.2
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 1.5e-74 283.9 302 57.0
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 1.9e-74 283.5 322 57.1
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 2.5e-74 283.1 314 58.3
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 2.5e-74 283.1 325 56.0
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 2.5e-74 283.1 304 54.6
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 4.3e-74 282.3 308 56.2
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 4.3e-74 282.3 343 51.6
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 5.6e-74 282.0 313 49.2
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.6e-74 282.0 316 56.0
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 9.6e-74 281.2 341 50.4
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 1.6e-73 280.4 295 49.8
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 6.2e-73 278.5 308 54.2
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 8.1e-73 278.1 303 58.7
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 8.1e-73 278.1 327 55.7
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 1.1e-72 277.7 307 56.0
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.4e-72 277.3 315 54.3
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 1.4e-72 277.3 326 54.3
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 1.8e-72 276.9 308 55.5
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 3.1e-72 276.2 314 56.4
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 4.0e-72 275.8 319 56.7
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 9.0e-72 274.6 297 48.8
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 9.0e-72 274.6 311 54.7
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 9.0e-72 274.6 295 54.6
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 9.0e-72 274.6 295 54.6
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 2.6e-71 273.1 306 50.0
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 3.4e-71 272.7 304 53.3
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 4.5e-71 272.3 301 54.5
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 7.6e-71 271.6 297 54.5
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 7.6e-71 271.6 324 52.8
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.0e-70 271.2 306 55.2
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.0e-70 271.2 321 54.2
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 2.2e-70 270.0 304 53.6
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.9e-70 269.6 305 52.8
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 4.9e-70 268.9 309 53.1
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 8.4e-70 268.1 301 54.2
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 8.4e-70 268.1 297 53.9
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 8.4e-70 268.1 297 53.9
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 8.4e-70 268.1 297 53.5
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 8.4e-70 268.1 297 53.5
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 7.1e-69 265.0 306 52.0
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 2.3e-67 260.0 298 53.0
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 2.3e-67 260.0 298 53.0
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 2.3e-67 260.0 325 53.2
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 1.9e-66 256.9 298 52.7
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 2.5e-66 256.5 187 64.2
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 3.3e-66 256.1 182 65.4
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 9.6e-66 254.6 330 48.2
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 1.3e-65 254.2 317 50.5
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 3.7e-65 252.7 264 59.5
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 4.8e-65 252.3 182 65.4
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 6.2e-65 251.9 305 49.5
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 1.1e-64 251.1 311 51.8
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 3.1e-64 249.6 319 48.3
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 4.0e-64 249.2 250 57.2
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 2.0e-63 246.9 294 53.7
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 4.5e-63 245.7 182 63.7
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 4.5e-63 245.7 182 63.7
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 1.7e-62 243.8 357 47.9
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 6.5e-62 241.9 279 48.4
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 2.1e-60 236.9 322 50.0
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 2.3e-59 233.4 400 39.5
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 3.9e-59 232.6 267 57.3
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 7.7e-55 218.4 259 52.5
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 1.6e-52 210.7 328 44.2
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 6.1e-52 208.8 187 54.5
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 6.7e-51 205.3 297 47.5
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 3.3e-50 203.0 297 40.1
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 4.3e-50 202.6 238 55.5
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 1.7e-49 200.7 306 40.2
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 3.6e-44 183.0 330 42.1
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 6.7e-43 178.7 150 57.3
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 6.3e-41 172.2 164 53.0
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 1.8e-40 170.6 213 50.2
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 1.5e-39 167.5 194 45.4
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 2.6e-39 166.8 182 48.4
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 3.2e-37 159.8 134 59.0
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 4.2e-37 159.5 136 56.6
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 7.0e-24 115.5 69 76.8
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 3.8e-22 109.8 121 52.9
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.2e-18 98.2 344 24.7
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.6e-18 97.1 152 48.7
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 7.5e-18 95.5 133 41.4
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 5.9e-15 85.9 142 38.7
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 2.5e-13 80.5 179 33.5
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 1.4e-11 74.7 45 75.6
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 7.5e-10 68.9 44 75.0
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 3.7e-09 66.6 43 62.8
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 4.9e-09 66.2 47 70.2
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 8.3e-09 65.5 39 74.4
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 9.2e-08 62.0 72 48.6
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 1.7e-06 57.8 40 60.0
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 2.9e-06 57.0 31 77.4
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 6.6e-06 55.8 138 29.0


User provided reference genes

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