Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 0.0e+00 1232.2 803 100.0
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 2.1e-136 490.7 527 53.7
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.3e-134 483.4 531 54.8
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 7.5e-134 482.3 527 53.7
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.4e-132 478.0 523 55.8
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 7.0e-132 475.7 548 56.6
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 9.1e-132 475.3 519 55.9
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.7e-131 473.8 490 61.8
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 3.5e-131 473.4 533 56.7
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 5.9e-131 472.6 526 52.3
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 1.0e-130 471.9 518 53.3
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 5.0e-130 469.5 535 53.5
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 5.0e-130 469.5 524 55.3
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.5e-129 468.0 523 53.3
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 1.5e-129 468.0 531 56.9
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 1.9e-129 467.6 520 56.7
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 5.5e-129 466.1 533 57.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 7.2e-129 465.7 523 58.1
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 7.2e-129 465.7 532 57.1
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 9.4e-129 465.3 539 55.7
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.2e-128 464.9 521 54.3
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.2e-128 464.9 521 54.3
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.6e-128 464.5 517 54.2
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 3.6e-128 463.4 519 58.8
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 6.1e-128 462.6 531 52.9
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.8e-127 461.1 535 51.0
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 2.3e-127 460.7 534 52.4
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 3.0e-127 460.3 520 53.8
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 5.2e-127 459.5 535 56.3
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.5e-126 458.0 528 57.4
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 2.0e-126 457.6 530 56.0
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 2.0e-126 457.6 527 53.5
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 5.7e-126 456.1 528 55.9
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.3e-125 454.9 510 53.3
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.3e-125 454.9 536 50.9
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.3e-125 454.9 527 55.2
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.8e-125 453.0 525 56.4
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 5.4e-124 449.5 531 54.2
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.3e-122 444.9 519 56.5
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 3.8e-122 443.4 822 40.6
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 9.5e-121 438.7 547 55.4
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 3.6e-120 436.8 545 51.9
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 8.0e-120 435.6 525 53.5
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 6.8e-119 432.6 522 52.7
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 5.7e-118 429.5 564 52.8
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.8e-116 424.5 530 51.1
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.8e-116 424.5 531 54.2
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.8e-116 424.5 520 55.6
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 1.0e-114 418.7 523 53.2
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 2.9e-114 417.2 549 50.3
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 6.6e-114 416.0 525 51.6
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 8.6e-114 415.6 546 49.8
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 1.5e-113 414.8 559 48.8
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.5e-113 414.8 528 53.6
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.9e-113 414.5 541 51.2
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.9e-113 414.5 472 58.3
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 4.3e-113 413.3 557 52.4
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 4.3e-113 413.3 534 51.7
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.0e-111 408.7 529 52.2
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.8e-111 407.9 503 55.9
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 8.9e-111 405.6 522 51.5
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 1.7e-109 401.4 521 50.9
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 4.9e-109 399.8 529 52.4
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 4.9e-109 399.8 517 49.1
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 8.3e-109 399.1 534 48.5
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-108 397.9 528 51.7
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 9.2e-108 395.6 521 49.5
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.2e-107 395.2 456 51.1
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 6.0e-107 392.9 515 50.9
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 6.0e-107 392.9 517 50.9
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 1.1e-105 388.7 522 49.2
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 2.5e-105 387.5 475 53.9
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 3.3e-105 387.1 531 53.5
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 4.7e-104 383.3 530 48.7
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 6.2e-104 382.9 299 66.9
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.1e-103 382.1 505 49.9
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.1e-103 382.1 535 49.7
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 2.2e-101 374.4 504 53.2
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.2e-101 374.4 504 53.2
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 4.9e-101 373.2 539 48.2
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 4.9e-101 373.2 546 47.8
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.9e-100 371.3 527 46.9
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.4e-100 370.9 503 48.9
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 9.2e-100 369.0 505 50.5
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.6e-99 368.2 527 48.6
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 4.6e-99 366.7 547 48.4
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 7.8e-99 365.9 528 48.3
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 1.1e-97 362.1 520 46.5
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 2.5e-97 360.9 534 44.6
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.2e-96 358.6 516 50.4
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.6e-96 358.2 500 49.4
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 3.6e-96 357.1 545 42.9
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 6.2e-96 356.3 523 47.6
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 5.2e-95 353.2 502 49.0
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 3.4e-94 350.5 508 52.6
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.4e-92 345.1 505 48.1
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 7.1e-92 342.8 530 45.1
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 6.6e-90 336.3 507 44.2
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.5e-89 335.1 534 45.5
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.6e-88 331.6 448 46.2
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.4e-87 328.6 425 53.6
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 9.9e-86 322.4 478 45.6
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 2.9e-85 320.9 518 42.7
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 2.9e-85 320.9 450 43.6
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 1.1e-84 318.9 553 42.7
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.9e-81 308.1 216 71.8
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 4.5e-70 270.4 562 37.9
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 2.0e-62 245.0 378 50.8
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 1.3e-61 242.3 212 59.9
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 4.9e-61 240.4 694 33.6
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.1e-60 239.2 474 41.8
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.3e-58 232.3 200 56.5
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 6.5e-53 213.4 193 54.9
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.6e-46 191.4 596 32.4
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 7.7e-46 189.9 176 55.1
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.8e-42 178.7 244 43.0
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 9.1e-39 166.4 229 43.7
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 4.5e-38 164.1 694 29.3
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 3.8e-37 161.0 267 49.8
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 4.2e-36 157.5 263 48.3
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 5.5e-36 157.1 258 52.7
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 9.4e-36 156.4 223 44.8
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 7.4e-33 146.7 523 28.3
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.2e-29 135.2 127 52.8
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 2.3e-26 125.2 111 55.0
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 7.0e-23 113.6 281 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 4.5e-22 110.9 345 32.5
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.0e-21 109.8 198 33.8
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.6e-19 102.4 90 60.0
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 3.0e-18 98.2 100 49.0
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.5e-17 95.9 112 50.0
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 7.5e-17 93.6 92 50.0
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 3.7e-16 91.3 145 41.4
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 2.0e-14 85.5 103 48.5
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 8.5e-13 80.1 110 44.5
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 9.4e-12 76.6 206 33.0
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 3.6e-11 74.7 60 56.7
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 4.4e-09 67.8 113 39.8
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 4.5e-06 57.8 69 44.9
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.9e-06 57.4 46 52.2


User provided reference genes

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