Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.4e-305 1052.4 644 100.0
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.7e-16 92.0 372 26.3
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 1.1e-15 89.4 644 34.0
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 1.4e-13 82.4 586 24.7
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 5.4e-10 70.5 79 44.3
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 5.4e-10 70.5 79 44.3
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 7.1e-10 70.1 52 59.6
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 7.1e-10 70.1 52 61.5
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 7.1e-10 70.1 80 52.5
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 9.3e-10 69.7 52 61.5
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 9.3e-10 69.7 114 39.5
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 9.3e-10 69.7 54 57.4
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 9.3e-10 69.7 54 61.1
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.2e-09 69.3 72 48.6
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 1.2e-09 69.3 72 48.6
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 1.2e-09 69.3 52 57.7
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.2e-09 69.3 83 45.8
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 1.2e-09 69.3 54 57.4
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.6e-09 68.9 52 61.5
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.6e-09 68.9 52 59.6
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.6e-09 68.9 54 57.4
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.6e-09 68.9 54 57.4
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 2.1e-09 68.6 72 48.6
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 2.7e-09 68.2 107 37.4
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 2.7e-09 68.2 54 55.6
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 2.7e-09 68.2 54 55.6
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.7e-09 68.2 56 57.1
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 3.5e-09 67.8 72 47.2
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 3.5e-09 67.8 51 58.8
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 3.5e-09 67.8 52 63.5
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.5e-09 67.8 54 55.6
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 3.5e-09 67.8 52 57.7
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 4.6e-09 67.4 52 59.6
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 4.6e-09 67.4 53 60.4
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 6.0e-09 67.0 125 37.6
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 6.0e-09 67.0 54 55.6
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 6.0e-09 67.0 96 39.6
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.0e-09 67.0 96 39.6
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 7.8e-09 66.6 54 53.7
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 7.8e-09 66.6 67 52.2
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 7.8e-09 66.6 52 61.5
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 1.0e-08 66.2 52 59.6
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.0e-08 66.2 82 43.9
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 1.0e-08 66.2 74 47.3
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.0e-08 66.2 52 63.5
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.3e-08 65.9 52 55.8
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 1.3e-08 65.9 52 55.8
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.3e-08 65.9 134 35.1
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 1.7e-08 65.5 52 57.7
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.7e-08 65.5 52 57.7
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 2.3e-08 65.1 52 55.8
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.3e-08 65.1 56 55.4
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 2.3e-08 65.1 79 41.8
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 2.3e-08 65.1 75 45.3
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 2.3e-08 65.1 52 55.8
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 2.3e-08 65.1 52 59.6
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 2.3e-08 65.1 78 43.6
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 2.3e-08 65.1 52 55.8
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 3.9e-08 64.3 52 55.8
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.9e-08 64.3 52 61.5
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 3.9e-08 64.3 52 57.7
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 5.1e-08 63.9 52 55.8
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 5.1e-08 63.9 52 55.8
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 5.1e-08 63.9 54 57.4
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 5.1e-08 63.9 81 42.0
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 5.1e-08 63.9 52 55.8
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 6.6e-08 63.5 52 55.8
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 8.7e-08 63.2 77 44.2
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 8.7e-08 63.2 51 56.9
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 1.1e-07 62.8 82 42.7
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 1.5e-07 62.4 98 38.8
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 1.5e-07 62.4 52 53.8
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.5e-07 62.4 387 22.7
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.9e-07 62.0 71 46.5
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.9e-07 62.0 71 46.5
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 1.9e-07 62.0 54 55.6
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 1.9e-07 62.0 52 55.8
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.9e-07 62.0 52 55.8
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 2.5e-07 61.6 52 51.9
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 3.3e-07 61.2 51 54.9
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 3.3e-07 61.2 112 36.6
Gohir.A09G092100 Gossypium hirsutum HOM05D001312 ORTHO05D001832 3.3e-07 61.2 75 48.0
Thecc.09G293200 Theobroma cacao HOM05D001312 ORTHO05D001832 3.3e-07 61.2 75 48.0
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 4.3e-07 60.8 52 50.0
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 4.3e-07 60.8 53 54.7
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 4.3e-07 60.8 52 50.0
Gohir.D09G092032 Gossypium hirsutum HOM05D001312 ORTHO05D001832 4.3e-07 60.8 75 48.0
Gorai.006G108600 Gossypium raimondii HOM05D001312 ORTHO05D001832 4.3e-07 60.8 75 48.0
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 4.3e-07 60.8 52 55.8
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 5.6e-07 60.5 87 42.5
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 5.6e-07 60.5 52 53.8
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 5.6e-07 60.5 52 53.8
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 5.6e-07 60.5 69 44.9
vmacro03225 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 5.6e-07 60.5 82 46.3
vmacro23022 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 5.6e-07 60.5 82 46.3
vmacro23111 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 5.6e-07 60.5 82 46.3
Duzib168G2332 Durio zibethinus HOM05D001312 ORTHO05D001832 7.3e-07 60.1 117 35.0
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 7.3e-07 60.1 114 35.1
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 9.6e-07 59.7 52 51.9
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 9.6e-07 59.7 52 53.8
ECA248G0607 Erigeron canadensis HOM05D001312 ORTHO05D001832 9.6e-07 59.7 86 43.0
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 9.6e-07 59.7 52 51.9
COL.COLO4_19275 Corchorus olitorius HOM05D001312 ORTHO05D001832 1.3e-06 59.3 75 49.3
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 1.3e-06 59.3 52 50.0
Dinv12534 Davidia involucrata HOM05D001312 ORTHO05D001832 1.3e-06 59.3 107 35.5
SHI06140 Sapria himalayana HOM05D001312 ORTHO05D001832 1.3e-06 59.3 82 46.3
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 1.3e-06 59.3 52 55.8
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 1.3e-06 59.3 52 53.8
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 1.6e-06 58.9 107 38.3
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 2.1e-06 58.5 126 35.7
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 2.8e-06 58.2 391 37.3
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.6e-06 57.8 120 37.5
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 3.6e-06 57.8 52 51.9
Manes.11G155800 Manihot esculenta HOM05D001312 ORTHO05D001832 3.6e-06 57.8 88 40.9
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 4.8e-06 57.4 110 36.4
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 8.1e-06 56.6 53 52.8
Sopen11g026500 Solanum pennellii HOM05D001312 ORTHO05D001832 8.1e-06 56.6 57 52.6


User provided reference genes

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