Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 0.0e+00 1366.7 696 100.0
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 0.0e+00 1082.8 696 78.2
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 1.3e-307 1059.3 699 77.7
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.6e-305 1052.4 693 77.1
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 8.9e-301 1036.6 697 76.5
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 1.9e-298 1028.9 700 76.6
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 4.1e-298 1027.7 745 72.6
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 1.0e-296 1023.1 692 75.7
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 3.9e-296 1021.1 694 75.4
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 1.9e-295 1018.8 699 75.0
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 1.9e-295 1018.8 694 74.5
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 1.2e-294 1016.1 695 74.2
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 1.6e-294 1015.8 694 75.1
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 2.8e-294 1015.0 697 74.9
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 1.1e-293 1013.1 696 74.0
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 6.8e-293 1010.4 696 73.9
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 8.9e-293 1010.0 694 74.5
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 3.4e-292 1008.1 695 74.1
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 3.4e-292 1008.1 699 74.0
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 9.9e-292 1006.5 693 74.7
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 1.7e-291 1005.7 701 73.2
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 4.1e-290 1001.1 696 73.1
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 9.2e-290 1000.0 695 73.5
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 1.6e-289 999.2 699 73.7
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 7.8e-289 996.9 698 73.2
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 3.9e-288 994.6 694 72.8
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 3.9e-288 994.6 697 74.0
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 8.6e-288 993.4 731 71.0
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 2.5e-287 991.9 693 73.4
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 3.3e-287 991.5 695 73.8
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 4.3e-287 991.1 697 72.9
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 9.5e-287 989.9 697 73.6
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 3.6e-286 988.0 694 73.1
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 4.7e-286 987.6 693 73.3
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 8.1e-286 986.9 694 73.8
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 1.4e-285 986.1 697 73.2
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 1.4e-285 986.1 696 72.1
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 1.8e-285 985.7 694 73.2
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 3.1e-285 984.9 693 73.9
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 3.1e-285 984.9 693 74.0
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 4.0e-285 984.6 695 72.1
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 6.8e-285 983.8 692 72.5
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 3.4e-284 981.5 692 73.0
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 5.8e-284 980.7 692 72.7
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.7e-283 979.2 696 72.3
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 1.7e-283 979.2 801 64.5
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 2.2e-283 978.8 739 68.9
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 2.2e-283 978.8 697 72.7
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 2.9e-283 978.4 692 73.0
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 8.4e-283 976.9 695 71.9
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.9e-282 975.7 692 72.0
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 3.2e-282 974.9 697 72.6
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 2.1e-281 972.2 706 71.7
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 4.6e-281 971.1 695 71.9
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.7e-280 969.1 693 72.4
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 3.0e-280 968.4 695 72.5
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 5.1e-280 967.6 693 72.0
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.7e-280 966.8 692 72.0
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.1e-279 966.5 692 72.0
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 9.6e-279 963.4 708 71.2
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 1.2e-278 963.0 676 73.5
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 2.8e-278 961.8 694 71.9
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 3.6e-278 961.4 694 71.8
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 4.7e-278 961.1 694 71.6
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 2.4e-277 958.7 698 71.2
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.0e-276 955.7 725 67.6
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 9.9e-276 953.4 695 70.9
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.3e-275 953.0 695 70.9
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 2.9e-275 951.8 694 70.3
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 2.9e-275 951.8 697 72.2
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 6.4e-275 950.7 694 70.6
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 1.4e-274 949.5 694 70.5
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 3.2e-274 948.3 696 70.3
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 5.4e-274 947.6 694 70.3
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 5.4e-274 947.6 694 70.3
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 9.3e-274 946.8 692 70.5
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 6.0e-273 944.1 695 70.1
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 1.0e-272 943.3 695 70.5
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 8.7e-272 940.3 651 73.9
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 3.3e-271 938.3 697 70.9
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 1.3e-270 936.4 692 70.2
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 4.8e-270 934.5 694 69.6
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 1.3e-267 926.4 699 68.5
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 3.2e-266 921.8 695 67.3
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.4e-258 896.3 693 66.2
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.9e-255 885.9 559 80.7
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 4.3e-247 858.2 723 63.2
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 2.1e-241 839.3 694 64.0
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 2.1e-241 839.3 1199 43.9
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.6e-241 838.2 570 74.9
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 9.1e-237 823.9 725 60.4
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 1.7e-227 793.1 766 58.9
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.8e-224 783.1 519 76.5
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 4.5e-212 741.9 469 78.0
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 1.0e-211 740.7 647 60.1
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 6.1e-209 731.5 709 57.0
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 1.8e-197 693.3 515 69.5
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.6e-196 690.3 521 67.9
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 5.0e-187 658.7 415 78.1
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 1.8e-139 500.7 721 42.2
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 5.6e-138 495.7 710 42.0
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 1.0e-134 485.0 713 40.4
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 2.5e-122 443.7 264 86.4
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.4e-120 438.0 695 42.6
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 4.4e-114 416.4 477 48.4
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.8e-113 413.7 694 41.2
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 2.4e-112 410.6 277 76.9
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.4e-106 389.8 232 81.0
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.2e-102 377.5 661 40.2
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 3.5e-95 353.6 425 50.6
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 1.0e-94 352.1 688 36.9
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 4.3e-77 293.5 297 57.6
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 2.9e-73 280.8 250 61.2
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 1.5e-66 258.5 198 70.7
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 1.1e-64 252.3 167 72.5
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.1e-60 238.0 225 59.6
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 1.6e-44 185.3 136 72.8
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 1.6e-44 185.3 136 72.8
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 3.0e-38 164.5 101 78.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 5.3e-35 153.7 118 72.9
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 3.0e-30 137.9 115 55.7
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.9e-24 118.6 86 64.0
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.5e-16 91.7 75 70.7
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.0e-14 86.3 68 61.8
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 1.3e-14 85.9 151 36.4
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 8.7e-14 83.2 64 70.3


User provided reference genes

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