Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.3e-76 289.7 142 100.0
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 4.1e-43 178.3 99 85.9
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 9.1e-43 177.2 99 84.8
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.5e-42 176.4 99 85.9
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 4.5e-42 174.9 100 83.0
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.3e-41 173.3 98 85.7
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.7e-41 172.9 98 83.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.2e-41 172.6 98 83.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 2.9e-41 172.2 98 83.7
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.9e-41 172.2 98 83.7
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.9e-41 172.2 98 83.7
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.9e-41 172.2 98 83.7
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 2.9e-41 172.2 98 83.7
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.8e-41 171.8 98 83.7
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 5.0e-41 171.4 99 82.8
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.0e-41 171.4 98 83.7
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 6.5e-41 171.0 98 82.7
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 8.5e-41 170.6 98 82.7
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.1e-40 170.2 98 82.7
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.1e-40 170.2 110 74.5
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.4e-40 169.9 98 84.7
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.4e-40 169.9 98 84.7
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.4e-40 169.9 98 82.7
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-40 169.9 99 82.8
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-40 169.9 99 82.8
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.4e-40 169.9 98 82.7
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.9e-40 169.5 98 82.7
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.9e-40 169.5 99 82.8
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.9e-40 169.5 98 84.7
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 2.5e-40 169.1 98 83.7
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 2.5e-40 169.1 98 84.7
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 3.2e-40 168.7 99 80.8
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.2e-40 168.7 98 81.6
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 3.2e-40 168.7 99 80.8
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 3.2e-40 168.7 99 80.8
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 4.2e-40 168.3 98 81.6
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 4.2e-40 168.3 99 81.8
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 4.2e-40 168.3 99 81.8
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 5.5e-40 167.9 98 82.7
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 5.5e-40 167.9 98 82.7
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 5.5e-40 167.9 98 81.6
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 5.5e-40 167.9 98 81.6
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 5.5e-40 167.9 98 81.6
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 5.5e-40 167.9 98 81.6
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 7.2e-40 167.5 98 82.7
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 7.2e-40 167.5 98 81.6
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.4e-40 167.2 98 82.7
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 9.4e-40 167.2 98 81.6
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.2e-39 166.8 99 79.8
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.2e-39 166.8 98 80.6
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.2e-39 166.8 98 81.6
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.6e-39 166.4 98 81.6
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.6e-39 166.4 98 79.6
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 2.1e-39 166.0 99 79.8
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.1e-39 166.0 98 80.6
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 2.7e-39 165.6 98 80.6
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 2.7e-39 165.6 98 82.7
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 2.7e-39 165.6 99 79.8
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 3.6e-39 165.2 99 79.8
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.6e-39 165.2 98 80.6
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 3.6e-39 165.2 98 81.6
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 4.7e-39 164.9 101 79.2
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.7e-39 164.9 98 79.6
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.7e-39 164.9 98 79.6
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 4.7e-39 164.9 98 80.6
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 6.1e-39 164.5 98 78.6
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 6.1e-39 164.5 98 80.6
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 6.1e-39 164.5 98 80.6
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 6.1e-39 164.5 98 79.6
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 6.1e-39 164.5 98 79.6
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 7.9e-39 164.1 98 80.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.9e-39 164.1 99 79.8
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.9e-39 164.1 99 79.8
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.0e-38 163.7 101 78.2
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.0e-38 163.7 99 77.8
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.4e-38 163.3 98 79.6
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.4e-38 163.3 127 63.0
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.4e-38 163.3 98 79.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.4e-38 163.3 100 79.0
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.8e-38 162.9 98 79.6
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 2.3e-38 162.5 100 80.0
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 3.0e-38 162.2 99 76.8
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 3.0e-38 162.2 99 78.8
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 3.0e-38 162.2 98 78.6
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.0e-38 162.2 98 78.6
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 3.0e-38 162.2 98 79.6
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 3.0e-38 162.2 99 79.8
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.9e-38 161.8 98 78.6
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 3.9e-38 161.8 101 77.2
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 5.2e-38 161.4 98 78.6
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 5.2e-38 161.4 99 78.8
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.7e-38 161.0 99 75.8
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.5e-37 159.8 98 78.6
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 2.6e-37 159.1 99 77.8
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.3e-37 158.7 98 77.6
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 9.7e-37 157.1 90 83.3
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.3e-36 156.8 98 76.5
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 3.7e-36 155.2 98 77.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 3.7e-36 155.2 98 77.6
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 8.2e-36 154.1 98 75.5
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 2.4e-35 152.5 98 74.5
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.2e-34 150.2 98 75.5
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.2e-34 150.2 98 75.5
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 2.0e-34 149.4 93 76.3
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.6e-34 149.1 98 73.5
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 5.9e-34 147.9 98 75.5
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.0e-33 147.1 98 72.4
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.0e-33 147.1 102 71.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.3e-33 146.7 95 76.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.3e-33 146.7 98 75.5
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 2.2e-33 146.0 100 71.0
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 3.8e-33 145.2 98 72.4
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 3.8e-33 145.2 103 70.9
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.1e-32 143.7 98 72.4
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 8.0e-31 137.5 105 62.9
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 8.0e-31 137.5 98 66.3
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 8.0e-31 137.5 102 65.7
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.0e-30 137.1 98 66.3
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 1.0e-30 137.1 98 66.3
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 1.0e-30 137.1 102 63.7
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 3.0e-30 135.6 102 63.7
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 3.0e-30 135.6 98 65.3
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 3.0e-30 135.6 98 65.3
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 3.0e-30 135.6 98 65.3
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 3.0e-30 135.6 98 65.3
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 4.0e-30 135.2 102 62.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 5.2e-30 134.8 102 63.7
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 6.7e-30 134.4 98 64.3
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.2e-29 133.7 98 65.3
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.3e-29 132.1 104 64.4
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 7.5e-29 131.0 99 64.6
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 7.5e-29 131.0 99 64.6
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 7.5e-29 131.0 99 64.6
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 7.5e-29 131.0 99 64.6
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.8e-28 129.0 98 70.4
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 4.8e-28 128.3 83 75.9
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 3.1e-27 125.6 102 64.7
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.2e-26 123.6 66 87.9
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.6e-26 123.2 82 76.8
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 5.0e-25 118.2 81 69.1
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 6.5e-25 117.9 98 58.2
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.9e-24 116.3 75 80.0
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 9.4e-24 114.0 96 62.5
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 2.1e-23 112.8 96 62.5
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 8.0e-23 110.9 66 80.3
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.2e-21 107.1 100 57.0
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.7e-20 103.2 56 82.1
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 2.8e-20 102.4 84 63.1
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.4e-19 100.1 82 61.0
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.6e-18 96.7 82 59.8
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 2.7e-18 95.9 84 56.0
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.8e-17 92.0 79 63.3
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.5e-16 90.1 88 53.4
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 4.0e-14 82.0 48 79.2
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.2e-13 80.5 49 75.5
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 3.4e-13 79.0 48 75.0
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.7e-12 76.6 48 72.9
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 4.9e-12 75.1 85 48.2
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.4e-11 73.6 98 43.9
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.6e-07 60.1 80 45.0


User provided reference genes

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