Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 1.3e-154 549.7 269 100.0
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 3.2e-41 172.9 272 37.1
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.6e-40 170.6 277 39.4
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 2.1e-40 170.2 269 37.9
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 4.1e-36 156.0 322 34.5
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.2e-35 154.5 271 35.8
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 2.0e-35 153.7 288 33.3
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.0e-34 151.4 266 36.1
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.0e-34 151.4 271 35.1
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-34 150.6 271 34.7
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.7e-34 150.6 288 31.6
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 5.0e-34 149.1 279 35.5
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.5e-33 147.5 298 31.5
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 1.5e-33 147.5 269 32.7
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 5.5e-33 145.6 286 34.3
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 7.2e-33 145.2 267 34.5
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 9.5e-33 144.8 266 33.5
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.2e-32 144.4 281 33.1
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 2.1e-32 143.7 273 34.1
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.1e-32 143.7 267 34.1
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 2.8e-32 143.3 270 34.1
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 3.6e-32 142.9 269 31.6
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 4.7e-32 142.5 274 31.4
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 8.0e-32 141.7 280 32.1
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.0e-31 141.4 274 32.8
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.4e-31 141.0 275 31.3
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.0e-31 139.4 274 32.8
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 4.0e-31 139.4 254 33.5
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 5.2e-31 139.0 293 31.4
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 6.8e-31 138.7 267 33.7
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.2e-30 137.9 269 30.5
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.2e-30 137.9 278 30.9
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 2.0e-30 137.1 274 32.5
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 2.6e-30 136.7 269 32.0
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.4e-30 136.3 274 33.2
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 3.4e-30 136.3 273 33.7
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 4.4e-30 136.0 279 31.2
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.4e-30 136.0 285 31.6
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 9.8e-30 134.8 271 32.8
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.2e-29 133.7 282 31.9
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.7e-29 132.9 295 31.5
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 3.7e-29 132.9 283 32.9
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 4.9e-29 132.5 277 32.1
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 6.3e-29 132.1 284 29.2
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 6.3e-29 132.1 280 32.5
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 1.1e-28 131.3 251 32.7
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 3.1e-28 129.8 274 30.3
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 4.1e-28 129.4 288 32.6
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 4.1e-28 129.4 260 33.5
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 5.4e-28 129.0 278 31.3
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 9.2e-28 128.3 164 37.8
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 1.2e-27 127.9 257 33.5
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.2e-27 127.9 242 32.6
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.2e-27 127.9 278 32.4
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.6e-27 127.5 279 31.5
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.6e-27 127.5 320 27.8
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.0e-27 127.1 269 33.8
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.0e-27 127.1 285 31.6
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 4.5e-27 125.9 255 32.9
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.5e-27 125.9 291 32.0
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 5.9e-27 125.6 279 29.7
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 7.8e-27 125.2 273 30.8
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 1.0e-26 124.8 282 29.8
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.0e-26 124.8 263 31.2
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.3e-26 124.4 262 32.4
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.7e-26 124.0 269 30.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 2.9e-26 123.2 267 28.1
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 8.6e-26 121.7 87 57.5
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 8.6e-26 121.7 102 54.9
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.5e-25 120.2 100 50.0
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 3.3e-25 119.8 88 56.8
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.3e-25 119.8 81 61.7
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 4.3e-25 119.4 352 25.9
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 4.3e-25 119.4 84 57.1
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 7.3e-25 118.6 291 29.6
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 9.5e-25 118.2 298 30.2
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 9.5e-25 118.2 225 33.3
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.6e-24 117.5 94 55.3
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.6e-24 117.5 263 31.6
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.6e-24 117.5 76 61.8
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.8e-24 116.7 101 47.5
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.8e-24 116.7 145 43.4
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 4.7e-24 115.9 88 55.7
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 4.7e-24 115.9 82 58.5
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.4e-23 114.4 92 53.3
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 3.0e-23 113.2 76 61.8
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.2e-22 111.3 78 60.3
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.2e-22 111.3 263 29.3
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-22 111.3 109 47.7
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.2e-22 111.3 247 30.4
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.0e-22 110.5 76 56.6
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 2.6e-22 110.2 71 63.4
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 3.4e-22 109.8 321 29.0
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 4.4e-22 109.4 250 32.0
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 5.7e-22 109.0 260 29.2
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.3e-21 107.8 97 48.5
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.3e-21 107.8 97 48.5
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 2.2e-21 107.1 88 54.5
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 2.2e-21 107.1 88 54.5
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 2.9e-21 106.7 78 56.4
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 3.7e-21 106.3 92 45.7
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.4e-21 105.5 83 55.4
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-20 104.8 318 28.9
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.1e-20 104.8 67 62.7
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.4e-20 104.4 67 62.7
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-20 104.0 95 48.4
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.8e-20 104.0 74 58.1
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.4e-20 103.6 84 48.8
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.2e-20 103.2 107 41.1
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 4.1e-20 102.8 73 53.4
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 4.1e-20 102.8 71 60.6
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 4.1e-20 102.8 71 60.6
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 4.1e-20 102.8 138 34.8
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 5.4e-20 102.4 84 54.8
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 5.4e-20 102.4 350 27.1
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.4e-20 102.4 117 40.2
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.6e-19 100.9 71 59.2
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.6e-19 100.9 71 59.2
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-19 100.5 71 59.2
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 5.9e-19 99.0 74 55.4
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 7.8e-19 98.6 77 51.9
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 7.8e-19 98.6 109 45.0
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.8e-19 98.6 75 54.7
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.8e-19 98.6 75 54.7
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 7.8e-19 98.6 231 32.9
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.0e-18 98.2 92 43.5
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-18 97.4 74 55.4
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.7e-18 97.4 74 55.4
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.7e-18 97.4 76 52.6
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-18 97.4 228 32.5
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 3.9e-18 96.3 75 57.3
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 3.9e-18 96.3 77 53.2
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 8.6e-18 95.1 71 56.3
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 8.6e-18 95.1 135 35.6
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.9e-17 94.0 73 47.9
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-17 94.0 73 47.9
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-17 94.0 73 47.9
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.9e-17 94.0 73 47.9
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 1.9e-17 94.0 73 47.9
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.5e-17 93.6 79 51.9
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-17 92.8 73 52.1
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 4.3e-17 92.8 72 50.0
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.6e-17 92.4 79 50.6
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 7.3e-17 92.0 73 50.7
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 8.0e-16 88.6 90 40.0
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 2.3e-15 87.0 74 50.0
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 4.0e-15 86.3 234 32.1
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 5.2e-15 85.9 266 25.6
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 2.6e-14 83.6 251 25.9
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 9.8e-14 81.6 77 49.4
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.9e-13 79.3 68 48.5
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 2.7e-11 73.6 69 49.3
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 7.8e-11 72.0 232 28.0
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 2.5e-09 67.0 67 40.3
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.2e-08 64.7 40 60.0
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.6e-08 63.2 98 38.8
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 4.0e-07 59.7 41 58.5
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 8.9e-07 58.5 40 57.5
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-06 58.2 53 47.2
BraA07t30821Z Brassica rapa HOM05D001580 ORTHO05D001517 3.4e-06 56.6 189 30.2


User provided reference genes

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