Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.6e-56 221.9 113 100.0
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.7e-50 201.8 112 91.1
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 5.5e-35 151.0 112 69.6
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.8e-31 138.7 108 65.7
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 6.3e-31 137.5 113 61.1
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 6.3e-31 137.5 107 65.4
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.4e-30 136.3 110 60.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 5.4e-30 134.4 106 63.2
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.6e-29 132.9 110 59.1
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.0e-28 130.2 105 63.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.3e-28 129.8 115 60.0
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.3e-28 129.8 110 61.8
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.7e-28 129.4 117 59.8
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 5.0e-28 127.9 113 61.1
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 5.0e-28 127.9 111 63.1
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 6.6e-28 127.5 114 59.6
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 8.6e-28 127.1 104 64.4
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.1e-27 126.7 114 58.8
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 1.9e-27 125.9 91 69.2
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.5e-27 125.6 111 61.3
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 2.5e-27 125.6 104 63.5
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.3e-27 125.2 109 62.4
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 4.3e-27 124.8 110 56.4
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 5.6e-27 124.4 104 63.5
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.3e-27 124.0 110 63.6
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.3e-27 124.0 111 62.2
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.5e-27 123.6 111 62.2
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.5e-27 123.6 111 61.3
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.2e-26 123.2 108 62.0
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.2e-26 123.2 110 60.9
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.2e-26 123.2 110 60.9
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.2e-26 123.2 112 58.0
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.2e-26 123.2 100 65.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 2.1e-26 122.5 110 60.0
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 2.1e-26 122.5 110 60.0
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 2.1e-26 122.5 110 60.0
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.8e-26 122.1 110 60.0
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 3.6e-26 121.7 109 60.6
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.6e-26 121.7 109 56.9
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.6e-26 121.7 109 56.9
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.6e-26 121.7 109 56.9
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 3.6e-26 121.7 109 60.6
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 4.7e-26 121.3 113 57.5
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 4.7e-26 121.3 109 59.6
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 4.7e-26 121.3 109 60.6
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 4.7e-26 121.3 109 58.7
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 4.7e-26 121.3 109 59.6
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 6.1e-26 120.9 109 60.6
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 6.1e-26 120.9 105 61.9
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 6.1e-26 120.9 106 61.3
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 6.1e-26 120.9 109 59.6
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 6.1e-26 120.9 110 59.1
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 8.0e-26 120.6 97 56.7
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 8.0e-26 120.6 102 63.7
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 8.0e-26 120.6 110 59.1
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 8.0e-26 120.6 100 63.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.0e-25 120.2 98 63.3
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.0e-25 120.2 116 58.6
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.0e-25 120.2 111 61.3
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 1.0e-25 120.2 109 56.0
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.0e-25 120.2 109 56.0
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.0e-25 120.2 106 58.5
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.4e-25 119.8 105 61.0
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.3e-25 119.0 105 61.9
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.3e-25 119.0 105 61.9
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 2.3e-25 119.0 105 61.9
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 3.0e-25 118.6 109 58.7
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.0e-25 118.6 110 58.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 4.0e-25 118.2 111 55.9
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 5.2e-25 117.9 109 59.6
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 5.2e-25 117.9 104 58.7
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 6.8e-25 117.5 109 58.7
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 8.9e-25 117.1 110 53.6
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 8.9e-25 117.1 110 53.6
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.9e-25 117.1 111 59.5
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.5e-24 116.3 109 56.9
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.0e-24 115.9 110 57.3
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.4e-24 115.2 105 57.1
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.4e-24 115.2 105 57.1
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 4.4e-24 114.8 110 52.7
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 5.7e-24 114.4 100 59.0
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 5.7e-24 114.4 110 54.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 5.7e-24 114.4 109 56.9
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 7.5e-24 114.0 108 53.7
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 9.8e-24 113.6 108 54.6
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 9.8e-24 113.6 105 56.2
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.7e-23 112.8 111 57.7
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.7e-23 112.8 109 51.4
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.7e-23 112.8 109 51.4
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.2e-23 112.5 110 53.6
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.2e-23 112.5 102 55.9
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.2e-23 112.5 105 56.2
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.9e-23 112.1 111 54.1
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.7e-23 111.7 109 55.0
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.9e-23 111.3 109 55.0
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 6.4e-23 110.9 108 53.7
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 6.4e-23 110.9 112 56.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 6.4e-23 110.9 116 54.3
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 8.3e-23 110.5 108 51.9
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 8.3e-23 110.5 119 52.1
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 8.3e-23 110.5 119 52.1
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 8.3e-23 110.5 119 52.1
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 8.3e-23 110.5 117 54.7
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.4e-22 109.8 107 53.3
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.8e-22 109.4 116 50.9
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 3.2e-22 108.6 120 50.8
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 3.2e-22 108.6 120 50.8
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 5.4e-22 107.8 101 56.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 7.0e-22 107.5 87 63.2
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 9.2e-22 107.1 108 52.8
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 1.2e-21 106.7 119 50.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.2e-21 106.7 113 50.4
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 4.6e-21 104.8 117 50.4
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 5.9e-21 104.4 116 49.1
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.7e-20 102.8 115 54.8
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 5.0e-20 101.3 109 51.4
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 5.0e-20 101.3 108 52.8
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.5e-19 99.8 80 65.0
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.5e-19 99.8 105 53.3
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.5e-19 99.0 91 59.3
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 9.5e-19 97.1 120 47.5
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 9.5e-19 97.1 101 53.5
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.2e-18 96.7 105 51.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.6e-18 96.3 108 49.1
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.1e-18 95.9 101 53.5
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.1e-18 95.9 101 53.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.8e-18 95.5 103 47.6
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.8e-18 95.5 104 51.9
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 8.0e-18 94.0 105 50.5
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.1e-17 93.6 93 55.9
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.4e-17 93.2 103 46.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.1e-17 92.0 110 50.0
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.6e-16 89.0 110 49.1
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 5.8e-16 87.8 98 50.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.3e-15 86.7 109 45.0
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.7e-15 86.3 95 50.5
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 4.1e-14 81.6 102 43.1
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 9.2e-14 80.5 99 44.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 9.2e-14 80.5 83 51.8
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-13 79.3 90 53.3
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 2.3e-12 75.9 105 42.9
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 5.0e-12 74.7 102 41.2
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 6.6e-12 74.3 98 45.9
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 8.6e-12 73.9 109 40.4
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 9.5e-11 70.5 80 51.2
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 8.1e-10 67.4 51 62.7
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 2.3e-09 65.9 89 43.8
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 3.1e-09 65.5 97 44.3
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 4.0e-09 65.1 101 36.6
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.2e-09 64.7 59 61.0
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.2e-08 63.5 59 55.9
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.5e-08 63.2 77 44.2
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 7.5e-08 60.8 61 54.1
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 7.5e-08 60.8 67 49.3
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 9.9e-08 60.5 52 59.6
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 4.9e-07 58.2 77 44.2
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.9e-07 58.2 55 58.2
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.2e-06 55.5 43 60.5


User provided reference genes

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