Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G229 Amborella trichopoda HOM05D003186 ORTHO05D003452 2.5e-162 575.5 304 100.0
MBI04_g03333_MAGBIO Magnolia biondii HOM05D003186 ORTHO05D003452 2.1e-28 130.6 311 37.9
TAR375G0380 Trochodendron aralioides HOM05D003186 ORTHO05D003452 3.0e-27 126.7 329 37.1
Hma1.2p1_0021F.1_g014275 Hydrangea macrophylla HOM05D003186 ORTHO05D003452 4.3e-26 122.9 327 36.4
Hma1.2p1_0021F.1_g014290 Hydrangea macrophylla HOM05D003186 ORTHO05D003452 4.3e-26 122.9 327 36.4
Manes.05G059100 Manihot esculenta HOM05D003186 ORTHO05D003452 9.7e-26 121.7 326 33.7
Dinv44017 Davidia involucrata HOM05D003186 ORTHO05D003452 1.1e-24 118.2 337 36.5
Cfa011019 Carpinus fangiana HOM05D003186 ORTHO05D003452 5.3e-24 115.9 327 33.3
TAR374G0545 Trochodendron aralioides HOM05D003186 ORTHO05D003452 1.2e-23 114.8 327 35.2
Atru.chr5.38 Acer truncatum HOM05D003186 ORTHO05D003452 1.5e-23 114.4 338 32.8
SalBow4G0872 Salvia bowleyana HOM05D003186 ORTHO05D003452 2.0e-23 114.0 331 32.9
Atru.chr5.68 Acer truncatum HOM05D003186 ORTHO05D003452 2.6e-23 113.6 340 32.6
MSTRG.28131 Avicennia marina HOM05D003186 ORTHO05D003452 4.5e-23 112.8 343 34.1
Nn1g00622 Nelumbo nucifera HOM05D003186 ORTHO05D003452 5.9e-23 112.5 349 35.2
Sed0022506 Sechium edule HOM05D003186 ORTHO05D003452 1.1e-21 108.2 343 32.7
Sabra02G0105200 Salix brachista HOM05D003186 ORTHO05D003452 1.9e-21 107.5 345 32.8
CiPaw.13G021700 Carya illinoinensis HOM05D003186 ORTHO05D003452 3.2e-21 106.7 335 33.1
Potri.002G135400 Populus trichocarpa HOM05D003186 ORTHO05D003452 3.2e-21 106.7 343 32.9
FAN06G1121 Fragaria x ananassa HOM05D003186 ORTHO05D003452 4.2e-21 106.3 329 31.3
Solyc01g088530.2 Solanum lycopersicum HOM05D003186 ORTHO05D003452 4.2e-21 106.3 339 34.5
Phvul.008G051200 Phaseolus vulgaris HOM05D003186 ORTHO05D003452 9.4e-21 105.1 330 32.1
PGSC0003DMG400001684 Solanum tuberosum HOM05D003186 ORTHO05D003452 1.2e-20 104.8 339 34.8
Ciclev10021280m.g Citrus clementina HOM05D003186 ORTHO05D003452 2.1e-20 104.0 322 33.9
Lj9P549T18 Lonicera japonica HOM05D003186 ORTHO05D003452 2.1e-20 104.0 336 32.7
VMungo1383G2278 Vigna mungo HOM05D003186 ORTHO05D003452 2.1e-20 104.0 332 32.5
PGR042G2698 Punica granatum HOM05D003186 ORTHO05D003452 3.6e-20 103.2 323 33.1
FAN10G1238 Fragaria x ananassa HOM05D003186 ORTHO05D003452 4.7e-20 102.8 334 30.5
Haze_02907 Corylus avellana HOM05D003186 ORTHO05D003452 6.1e-20 102.4 328 32.0
Nitab4.5_0006873g0020 Nicotiana tabacum HOM05D003186 ORTHO05D003452 6.1e-20 102.4 336 33.6
FAN10G4096 Fragaria x ananassa HOM05D003186 ORTHO05D003452 7.9e-20 102.1 334 30.5
FvH4_7g08720 Fragaria vesca HOM05D003186 ORTHO05D003452 1.0e-19 101.7 338 30.5
Sopen01g035390 Solanum pennellii HOM05D003186 ORTHO05D003452 1.4e-19 101.3 339 34.2
Glyma.09G247300 Glycine max HOM05D003186 ORTHO05D003452 1.8e-19 100.9 325 32.3
MSTRG.20661 Avicennia marina HOM05D003186 ORTHO05D003452 2.3e-19 100.5 328 32.3
COL.COLO4_12347 Corchorus olitorius HOM05D003186 ORTHO05D003452 2.3e-19 100.5 333 33.0
Duzib138G0449 Durio zibethinus HOM05D003186 ORTHO05D003452 3.0e-19 100.1 330 32.1
QL04p025941 Quercus lobata HOM05D003186 ORTHO05D003452 3.0e-19 100.1 337 35.3
QL04p026933 Quercus lobata HOM05D003186 ORTHO05D003452 3.0e-19 100.1 337 35.3
FAN03G3421 Fragaria x ananassa HOM05D003186 ORTHO05D003452 3.9e-19 99.8 337 30.6
Duzib268G0279 Durio zibethinus HOM05D003186 ORTHO05D003452 6.7e-19 99.0 326 30.4
Gorai.004G067500 Gossypium raimondii HOM05D003186 ORTHO05D003452 8.8e-19 98.6 333 32.7
Nitab4.5_0004088g0100 Nicotiana tabacum HOM05D003186 ORTHO05D003452 8.8e-19 98.6 334 32.9
Psat3g101600 Pisum sativum HOM05D003186 ORTHO05D003452 8.8e-19 98.6 329 31.9
TWI59G0953 Tripterygium wilfordii HOM05D003186 ORTHO05D003452 8.8e-19 98.6 334 32.0
Gohir.D08G065200 Gossypium hirsutum HOM05D003186 ORTHO05D003452 1.1e-18 98.2 333 32.4
Oeu024385.1 Olea europaea HOM05D003186 ORTHO05D003452 1.5e-18 97.8 333 30.6
Cc02_g25690 Coffea canephora HOM05D003186 ORTHO05D003452 2.0e-18 97.4 339 29.2
Glyma.18G245700 Glycine max HOM05D003186 ORTHO05D003452 5.7e-18 95.9 328 31.1
MSTRG.17102 Avicennia marina HOM05D003186 ORTHO05D003452 7.4e-18 95.5 328 31.7
Dinv43584 Davidia involucrata HOM05D003186 ORTHO05D003452 2.2e-17 94.0 328 32.9
CDE12G0434 Ceratophyllum demersum HOM05D003186 ORTHO05D003452 2.8e-17 93.6 307 35.2
Gohir.A12G099500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 2.8e-17 93.6 326 31.9
THA.LOC104817174 Tarenaya hassleriana HOM05D003186 ORTHO05D003452 2.8e-17 93.6 323 29.7
Migut.N01712 Erythranthe guttata HOM05D003186 ORTHO05D003452 3.7e-17 93.2 326 30.7
PGR004G1173 Punica granatum HOM05D003186 ORTHO05D003452 3.7e-17 93.2 312 32.4
TPR.G27403 Trifolium pratense HOM05D003186 ORTHO05D003452 3.7e-17 93.2 330 31.2
arahy.Tifrunner.gnm1.ann1.U9U8W4 Arachis hypogaea HOM05D003186 ORTHO05D003452 4.8e-17 92.8 332 31.9
Gohir.A08G055900 Gossypium hirsutum HOM05D003186 ORTHO05D003452 4.8e-17 92.8 333 31.5
FAN01G1315 Fragaria x ananassa HOM05D003186 ORTHO05D003452 6.3e-17 92.4 338 29.9
Potri.014G043800 Populus trichocarpa HOM05D003186 ORTHO05D003452 6.3e-17 92.4 337 34.1
CiPaw.14G016300 Carya illinoinensis HOM05D003186 ORTHO05D003452 1.1e-16 91.7 334 30.2
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.8e-16 90.9 322 36.3
Peaxi162Scf00745g00012 Petunia axillaris HOM05D003186 ORTHO05D003452 1.8e-16 90.9 335 30.4
Gohir.D12G102500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 2.4e-16 90.5 323 31.0
SGA_v2.0_scaffold77G25250 Striga asiatica HOM05D003186 ORTHO05D003452 2.4e-16 90.5 327 32.1
Ca_08022_v3 Cicer arietinum L. HOM05D003186 ORTHO05D003452 7.0e-16 89.0 332 30.7
Gorai.008G111700 Gossypium raimondii HOM05D003186 ORTHO05D003452 9.1e-16 88.6 323 30.7
Lj1g0019973 Lotus japonicus HOM05D003186 ORTHO05D003452 1.6e-15 87.8 329 29.8
Migut.B01481 Erythranthe guttata HOM05D003186 ORTHO05D003452 2.0e-15 87.4 328 31.7
Glyma.07G120800 Glycine max HOM05D003186 ORTHO05D003452 2.0e-15 87.4 314 29.0
HPP92_025455 Vanilla planifolia HOM05D003186 ORTHO05D003452 7.7e-15 85.5 316 33.5
Gohir.A08G141000 Gossypium hirsutum HOM05D003186 ORTHO05D003452 1.0e-14 85.1 330 29.1
Prupe.2G114900 Prunus persica HOM05D003186 ORTHO05D003452 1.0e-14 85.1 330 31.5
Eucgr.E01708 Eucalyptus grandis HOM05D003186 ORTHO05D003452 1.3e-14 84.7 355 30.7
Oeu034770.1 Olea europaea HOM05D003186 ORTHO05D003452 1.3e-14 84.7 329 29.8
Sabra14G0031700 Salix brachista HOM05D003186 ORTHO05D003452 1.3e-14 84.7 346 29.2
MELO3C022461.2 Cucumis melo HOM05D003186 ORTHO05D003452 1.7e-14 84.3 363 31.1
CANSAT25G0028 Cannabis sativa HOM05D003186 ORTHO05D003452 2.2e-14 84.0 359 30.6
CsaV3_6G006600 Cucumis sativus L. HOM05D003186 ORTHO05D003452 2.2e-14 84.0 342 32.7
MD07G1088100 Malus domestica HOM05D003186 ORTHO05D003452 2.2e-14 84.0 329 31.0
Sed0018587 Sechium edule HOM05D003186 ORTHO05D003452 2.2e-14 84.0 321 30.5
Thecc.01G403000 Theobroma cacao HOM05D003186 ORTHO05D003452 2.9e-14 83.6 330 28.8
Lj3g0018708 Lotus japonicus HOM05D003186 ORTHO05D003452 5.0e-14 82.8 317 30.3
CAN.G756.11 Capsicum annuum HOM05D003186 ORTHO05D003452 6.5e-14 82.4 330 33.6
Rhsim01G0144500 Rhododendron simsii HOM05D003186 ORTHO05D003452 8.5e-14 82.0 327 30.9
ECA236G2684 Erigeron canadensis HOM05D003186 ORTHO05D003452 1.1e-13 81.6 340 29.4
DCAR_025021 Daucus carota HOM05D003186 ORTHO05D003452 1.9e-13 80.9 321 31.2
THA.LOC104803082 Tarenaya hassleriana HOM05D003186 ORTHO05D003452 1.9e-13 80.9 351 29.1
Gohir.D08G162100 Gossypium hirsutum HOM05D003186 ORTHO05D003452 2.5e-13 80.5 330 28.2
Zm00001eb251070 Zea mays HOM05D003186 ORTHO05D003452 2.5e-13 80.5 329 31.3
ClCG06G000800 Citrullus lanatus HOM05D003186 ORTHO05D003452 3.2e-13 80.1 344 31.4
Gorai.004G168400 Gossypium raimondii HOM05D003186 ORTHO05D003452 3.2e-13 80.1 328 28.7
Zm00001eb072580 Zea mays HOM05D003186 ORTHO05D003452 4.2e-13 79.7 329 31.0
Ah.05g177570 Amaranthus hybridus HOM05D003186 ORTHO05D003452 9.4e-13 78.6 324 27.8
Phvul.010G041200 Phaseolus vulgaris HOM05D003186 ORTHO05D003452 1.2e-12 78.2 320 27.5
SGA_v2.0_scaffold95G28726 Striga asiatica HOM05D003186 ORTHO05D003452 1.2e-12 78.2 308 30.2
CsaV3_3G010380 Cucumis sativus L. HOM05D003186 ORTHO05D003452 2.7e-12 77.0 344 27.6
Actinidia05791 Actinidia chinensis HOM05D003186 ORTHO05D003452 3.6e-12 76.6 316 28.5
PSO339G5444 Papaver somniferum HOM05D003186 ORTHO05D003452 6.1e-12 75.9 362 29.3
A09p52480 Brassica napus HOM05D003186 ORTHO05D003452 8.0e-12 75.5 325 30.5
Psat4g219160 Pisum sativum HOM05D003186 ORTHO05D003452 1.0e-11 75.1 316 26.9
Glyma.03G103001 Glycine max HOM05D003186 ORTHO05D003452 1.4e-11 74.7 318 28.6
Actinidia33295 Actinidia chinensis HOM05D003186 ORTHO05D003452 1.8e-11 74.3 334 29.6
CARHR139820 Cardamine hirsuta HOM05D003186 ORTHO05D003452 1.8e-11 74.3 336 28.9
Gohir.D11G078500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 1.8e-11 74.3 329 28.3
BcaB02g08836 Brassica carinata HOM05D003186 ORTHO05D003452 3.0e-11 73.6 320 27.5
Gorai.007G084000 Gossypium raimondii HOM05D003186 ORTHO05D003452 3.0e-11 73.6 326 27.0
VMungo0331G1717 Vigna mungo HOM05D003186 ORTHO05D003452 3.0e-11 73.6 318 27.4
BcaC07g40522 Brassica carinata HOM05D003186 ORTHO05D003452 4.0e-11 73.2 326 30.4
C08p35230 Brassica napus HOM05D003186 ORTHO05D003452 4.0e-11 73.2 326 30.4
BolC8t51117H Brassica oleracea HOM05D003186 ORTHO05D003452 4.0e-11 73.2 326 30.4
BraA09t40678Z Brassica rapa HOM05D003186 ORTHO05D003452 4.0e-11 73.2 326 30.4
Duzib133G0015 Durio zibethinus HOM05D003186 ORTHO05D003452 4.0e-11 73.2 331 30.8
Lsat_1_v5_gn_7_11660 Lactuca sativa HOM05D003186 ORTHO05D003452 4.0e-11 73.2 353 27.2
Nitab4.5_0016340g0010 Nicotiana tabacum HOM05D003186 ORTHO05D003452 4.0e-11 73.2 327 29.1
Hund17130 Selenicereus undatus HOM05D003186 ORTHO05D003452 4.0e-11 73.2 313 28.1
MELO3C006262.2 Cucumis melo HOM05D003186 ORTHO05D003452 5.2e-11 72.8 346 27.7
Nn6g33672 Nelumbo nucifera HOM05D003186 ORTHO05D003452 8.8e-11 72.0 236 31.4
Zm00001eb187670 Zea mays HOM05D003186 ORTHO05D003452 1.1e-10 71.6 343 30.0
HPP92_022061 Vanilla planifolia HOM05D003186 ORTHO05D003452 1.5e-10 71.2 323 30.7
TWI23G1002 Tripterygium wilfordii HOM05D003186 ORTHO05D003452 2.0e-10 70.9 285 28.4
Thhalv10006502m.g Eutrema salsugineum HOM05D003186 ORTHO05D003452 2.6e-10 70.5 328 26.2
Migut.O00568 Erythranthe guttata HOM05D003186 ORTHO05D003452 1.3e-09 68.2 304 28.9
Oeu037407.1 Olea europaea HOM05D003186 ORTHO05D003452 1.3e-09 68.2 323 31.0
Sed0008398 Sechium edule HOM05D003186 ORTHO05D003452 1.3e-09 68.2 343 25.7
unitig_750.g28400 Utricularia gibba HOM05D003186 ORTHO05D003452 1.3e-09 68.2 319 28.5
AT2G44600 Arabidopsis thaliana HOM05D003186 ORTHO05D003452 1.7e-09 67.8 339 28.6
Nitab4.5_0000204g0050 Nicotiana tabacum HOM05D003186 ORTHO05D003452 1.7e-09 67.8 316 30.4
PSO648G0113 Papaver somniferum HOM05D003186 ORTHO05D003452 1.7e-09 67.8 362 28.7
BcaC07g40415 Brassica carinata HOM05D003186 ORTHO05D003452 2.8e-09 67.0 325 26.5
HanXRQChr04g0113081 Helianthus annuus HOM05D003186 ORTHO05D003452 2.8e-09 67.0 350 30.3
Rhsim07G0039500 Rhododendron simsii HOM05D003186 ORTHO05D003452 3.7e-09 66.6 337 27.6
HanXRQChr01g0017501 Helianthus annuus HOM05D003186 ORTHO05D003452 4.8e-09 66.2 326 27.0
Lalb_Chr03g0040811 Lupinus albus HOM05D003186 ORTHO05D003452 6.3e-09 65.9 325 28.3
DCAR_029522 Daucus carota HOM05D003186 ORTHO05D003452 8.2e-09 65.5 308 26.9
Aa31LG10G14340 Aethionema arabicum HOM05D003186 ORTHO05D003452 1.1e-08 65.1 336 27.1
Thhalv10001551m.g Eutrema salsugineum HOM05D003186 ORTHO05D003452 1.1e-08 65.1 343 26.2
HanXRQChr06g0168251 Helianthus annuus HOM05D003186 ORTHO05D003452 1.1e-08 65.1 328 28.7
BcaC02g12291 Brassica carinata HOM05D003186 ORTHO05D003452 1.4e-08 64.7 313 25.2
C04p05560 Brassica napus HOM05D003186 ORTHO05D003452 1.4e-08 64.7 313 25.2
Gohir.A11G073800 Gossypium hirsutum HOM05D003186 ORTHO05D003452 1.4e-08 64.7 326 26.4
AL5G42410 Arabidopsis lyrata HOM05D003186 ORTHO05D003452 1.8e-08 64.3 340 27.1
CARHR170520 Cardamine hirsuta HOM05D003186 ORTHO05D003452 4.1e-08 63.2 344 26.5
A05p04750 Brassica napus HOM05D003186 ORTHO05D003452 5.3e-08 62.8 319 26.0
BraA05t19451Z Brassica rapa HOM05D003186 ORTHO05D003452 9.1e-08 62.0 316 26.3
Lsat_1_v5_gn_4_38621 Lactuca sativa HOM05D003186 ORTHO05D003452 9.1e-08 62.0 346 27.7
Os02g0689500 Oryza sativa ssp. japonica HOM05D003186 ORTHO05D003452 1.2e-07 61.6 330 30.6
SalBow5G4877 Salvia bowleyana HOM05D003186 ORTHO05D003452 1.6e-07 61.2 322 26.4
Carub.0004s2715 Capsella rubella HOM05D003186 ORTHO05D003452 2.0e-07 60.8 329 28.6
ECA248G0129 Erigeron canadensis HOM05D003186 ORTHO05D003452 2.0e-07 60.8 331 27.5
Eucgr.D01170 Eucalyptus grandis HOM05D003186 ORTHO05D003452 2.0e-07 60.8 350 27.4
EL10Ac1g00705 Beta vulgaris HOM05D003186 ORTHO05D003452 2.7e-07 60.5 341 26.4
Sp4g26690 Schrenkiella parvula HOM05D003186 ORTHO05D003452 2.7e-07 60.5 342 25.4
Aa31LG1G26150 Aethionema arabicum HOM05D003186 ORTHO05D003452 3.5e-07 60.1 337 27.6
Ca_23143_v3 Cicer arietinum L. HOM05D003186 ORTHO05D003452 4.5e-07 59.7 318 27.0
Sp5g03010 Schrenkiella parvula HOM05D003186 ORTHO05D003452 4.5e-07 59.7 330 25.5
BolC4t22186H Brassica oleracea HOM05D003186 ORTHO05D003452 7.7e-07 58.9 321 24.9
AT3G60200 Arabidopsis thaliana HOM05D003186 ORTHO05D003452 1.7e-06 57.8 351 26.2
Lsat_1_v5_gn_0_5020 Lactuca sativa HOM05D003186 ORTHO05D003452 2.2e-06 57.4 364 27.7
arahy.Tifrunner.gnm1.ann1.92G265 Arachis hypogaea HOM05D003186 ORTHO05D003452 2.9e-06 57.0 325 25.5


User provided reference genes

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