Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.7e-120 436.0 224 100.0
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 4.1e-98 361.7 215 83.7
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 2.0e-97 359.4 215 82.8
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.5e-97 358.6 215 81.9
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 7.7e-97 357.5 215 83.3
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.3e-96 356.7 215 83.3
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.3e-96 356.7 215 81.9
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.3e-96 356.7 216 82.9
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 8.5e-96 354.0 215 82.3
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 8.5e-96 354.0 216 83.3
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 1.5e-95 353.2 215 82.8
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.5e-95 353.2 215 82.8
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.9e-95 352.8 218 81.2
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 3.2e-95 352.1 215 80.9
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.2e-95 352.1 212 83.5
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 3.2e-95 352.1 215 82.3
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 3.2e-95 352.1 215 80.5
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 7.2e-95 350.9 215 80.0
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.2e-95 350.9 215 81.9
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.4e-95 350.5 215 81.9
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.2e-94 350.1 215 82.3
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.6e-94 349.7 203 85.7
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.6e-94 349.7 215 80.9
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.6e-94 349.7 215 80.5
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.1e-94 349.4 203 85.2
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 2.1e-94 349.4 215 80.0
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.7e-94 349.0 215 79.5
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.7e-94 349.0 215 80.9
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.7e-94 349.0 216 83.3
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.7e-94 349.0 215 80.9
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 3.6e-94 348.6 215 80.5
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 3.6e-94 348.6 203 85.7
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 3.6e-94 348.6 210 83.8
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 3.6e-94 348.6 216 83.3
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.7e-94 348.2 215 81.4
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.7e-94 348.2 216 83.3
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 6.1e-94 347.8 215 80.5
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 8.0e-94 347.4 215 80.9
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.0e-93 347.1 215 80.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.4e-93 346.7 215 78.1
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.4e-93 346.7 203 85.2
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.4e-93 346.7 215 79.1
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 3.0e-93 345.5 216 81.9
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 3.0e-93 345.5 217 81.1
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.0e-93 345.1 214 80.4
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 4.0e-93 345.1 216 81.5
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 6.8e-93 344.4 217 81.6
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 6.8e-93 344.4 214 77.6
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 8.8e-93 344.0 215 79.1
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.2e-92 343.6 215 79.5
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.2e-92 343.6 215 80.0
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 1.2e-92 343.6 215 79.5
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.5e-92 343.2 215 80.5
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.0e-92 342.8 217 81.1
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 2.6e-92 342.4 215 80.9
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.6e-92 342.4 217 81.1
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.6e-92 342.4 214 82.2
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 3.4e-92 342.0 215 80.0
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 4.4e-92 341.7 203 84.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.7e-92 341.3 213 81.2
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 5.7e-92 341.3 203 83.3
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 9.8e-92 340.5 221 79.2
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 9.8e-92 340.5 215 77.7
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.3e-91 340.1 215 80.5
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.3e-91 340.1 214 79.4
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.7e-91 339.7 203 83.7
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.7e-91 339.7 203 83.7
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.7e-91 339.7 217 78.8
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.8e-91 339.0 203 83.7
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 2.8e-91 339.0 215 79.1
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 3.7e-91 338.6 207 81.2
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.7e-91 338.6 214 79.9
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.9e-91 338.2 215 80.0
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 4.9e-91 338.2 203 80.8
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 4.9e-91 338.2 206 81.1
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 4.9e-91 338.2 215 79.1
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 6.3e-91 337.8 215 78.6
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 6.3e-91 337.8 195 85.1
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 6.3e-91 337.8 214 77.1
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.1e-90 337.0 215 78.6
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.1e-90 337.0 214 79.0
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.8e-90 336.3 215 80.0
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.4e-90 335.9 215 79.1
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 2.4e-90 335.9 214 77.6
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 2.4e-90 335.9 217 78.3
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 2.4e-90 335.9 203 84.7
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 4.1e-90 335.1 203 84.2
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 5.4e-90 334.7 215 77.7
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 9.2e-90 334.0 215 76.7
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 9.2e-90 334.0 215 77.7
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.2e-89 333.6 216 79.6
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.2e-89 333.6 208 81.2
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 2.0e-89 332.8 215 77.2
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 2.0e-89 332.8 215 77.7
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 2.0e-89 332.8 215 77.2
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 3.5e-89 332.0 215 76.7
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 3.5e-89 332.0 208 79.8
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 3.5e-89 332.0 203 80.8
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 5.9e-89 331.3 215 77.7
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 7.7e-89 330.9 209 78.5
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 7.7e-89 330.9 217 78.8
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.0e-88 330.5 194 82.5
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.0e-88 330.5 213 76.5
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.9e-88 328.9 213 77.5
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.8e-88 328.6 221 75.6
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.1e-87 327.0 225 76.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 4.3e-87 325.1 202 81.2
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 1.2e-86 323.6 194 82.5
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 4.7e-86 321.6 193 83.4
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 3.4e-84 315.5 215 76.3
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 3.7e-83 312.0 215 73.5
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 6.4e-83 311.2 191 82.7
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 8.3e-83 310.8 190 80.5
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.4e-82 310.1 253 64.4
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 3.2e-82 308.9 196 78.6
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.2e-82 308.9 216 74.1
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.3e-80 302.8 202 76.2
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.2e-78 297.0 196 76.0
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 2.2e-75 286.2 215 71.6
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.9e-71 273.1 202 68.8
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 3.1e-69 265.8 202 65.8
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 5.8e-68 261.5 171 79.5
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 2.2e-67 259.6 210 64.3
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.3e-64 250.4 152 81.6
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 6.6e-64 248.1 148 81.1
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.3e-63 245.7 152 80.3
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.3e-63 245.7 208 64.9
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.1e-62 243.0 152 79.6
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 3.6e-62 242.3 197 62.4
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 6.2e-62 241.5 153 79.1
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 8.9e-61 237.7 215 60.9
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.2e-60 237.3 182 68.1
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 2.2e-59 233.0 155 76.1
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 2.2e-59 233.0 153 74.5
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.7e-56 223.4 225 52.0
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 5.2e-53 211.8 131 80.2
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 7.8e-49 198.0 207 49.3
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.0e-48 197.6 201 56.7
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 3.3e-39 166.0 108 76.9
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.4e-36 156.0 115 69.6
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 4.9e-35 152.1 104 71.2
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.5e-31 140.6 106 67.9
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-26 124.4 87 70.1
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 5.5e-26 122.1 134 52.2
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.9e-24 115.9 113 58.4
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-23 114.4 102 60.8
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 3.8e-19 99.4 63 71.4
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.9e-17 91.7 51 90.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.7e-14 82.8 97 49.5
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.4e-13 80.1 70 64.3
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 1.2e-12 77.8 68 60.3
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.1e-10 71.2 114 41.2
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 6.7e-08 62.0 205 25.9
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.7e-06 56.2 63 52.4


User provided reference genes

Program Settings