Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.5e-267 925.6 475 100.0
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.8e-156 556.6 472 63.3
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.2e-147 527.3 478 60.9
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 7.8e-147 524.6 477 60.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.6e-144 516.9 472 60.8
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.1e-144 516.5 472 59.5
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.6e-144 515.8 472 60.6
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 5.7e-142 508.4 473 59.2
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.2e-141 506.5 472 58.7
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 4.9e-141 505.4 476 58.6
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 7.0e-140 501.5 487 57.3
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.7e-139 499.6 469 58.8
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.9e-137 493.4 476 58.0
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.5e-137 493.0 471 58.6
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 2.5e-137 493.0 473 57.7
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 5.6e-137 491.9 476 57.6
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 9.5e-137 491.1 470 58.9
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 8.0e-136 488.0 471 55.8
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.0e-135 485.7 461 59.2
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 8.9e-135 484.6 470 57.2
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.5e-134 483.8 468 56.6
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 3.4e-134 482.6 469 56.3
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 4.4e-134 482.3 476 56.3
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 4.9e-133 478.8 469 53.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 3.2e-132 476.1 479 56.4
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.7e-131 473.0 475 54.7
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 7.8e-131 471.5 462 55.6
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 3.0e-130 469.5 467 54.0
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 5.0e-130 468.8 472 54.7
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 5.0e-130 468.8 472 54.7
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 3.3e-129 466.1 479 54.1
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 5.6e-129 465.3 472 54.2
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 7.3e-129 464.9 436 59.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.2e-128 464.2 480 53.8
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.6e-128 463.8 475 54.7
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.1e-128 463.4 465 54.8
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.1e-127 461.1 470 54.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.8e-127 460.3 476 53.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 7.5e-126 454.9 477 52.6
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 7.5e-126 454.9 468 53.0
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 2.2e-125 453.4 480 52.7
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.2e-125 453.4 480 52.9
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.9e-125 453.0 465 52.9
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 3.7e-125 452.6 472 53.2
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.9e-125 452.2 472 53.2
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.9e-125 452.2 472 53.2
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 4.9e-125 452.2 473 53.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 4.9e-125 452.2 405 60.7
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.1e-124 451.1 474 53.2
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.2e-124 449.5 476 52.1
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 4.1e-124 449.1 472 52.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 4.1e-124 449.1 472 53.2
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 4.1e-124 449.1 471 52.0
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 4.1e-124 449.1 476 52.1
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.4e-124 448.7 477 52.6
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 7.1e-124 448.4 475 52.4
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 7.1e-124 448.4 477 50.5
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 9.2e-124 448.0 471 51.4
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.0e-122 444.5 477 52.2
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.7e-122 443.7 474 51.9
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 8.6e-122 441.4 470 52.8
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.5e-118 430.6 477 49.9
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.0e-118 430.3 434 56.0
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 4.4e-118 429.1 471 52.0
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.1e-116 424.5 478 50.4
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.1e-116 422.5 439 53.3
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 3.0e-114 416.4 390 57.4
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 3.0e-114 416.4 403 53.8
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 3.9e-114 416.0 470 51.7
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.6e-112 410.6 395 53.7
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 4.7e-112 409.1 475 49.7
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 8.1e-112 408.3 454 51.3
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.1e-111 407.9 397 55.2
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 9.0e-111 404.8 391 54.7
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.2e-110 404.4 491 47.0
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.0e-110 403.7 484 48.1
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.4e-110 402.9 387 56.3
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.3e-109 401.0 409 51.8
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.2e-108 396.0 507 48.9
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-107 394.4 439 51.0
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 3.5e-107 392.9 476 48.9
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.5e-105 386.7 541 45.7
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 2.4e-103 380.2 409 51.8
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 4.0e-103 379.4 412 52.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.2e-102 377.9 469 49.3
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 4.5e-102 375.9 395 52.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.9e-101 372.5 554 42.4
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 7.1e-100 368.6 344 56.7
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 9.3e-100 368.2 359 57.1
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.1e-99 367.1 324 60.5
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.1e-99 367.1 519 46.8
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 3.9e-98 362.8 487 46.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.7e-96 356.3 478 46.7
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 6.0e-91 339.0 397 50.4
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 3.9e-90 336.3 293 59.4
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 1.5e-89 334.3 487 43.3
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.8e-88 329.3 297 58.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 3.1e-87 326.6 414 46.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 3.5e-83 313.2 370 47.8
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 5.1e-82 309.3 378 49.5
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 4.1e-79 299.7 274 58.4
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 6.9e-79 298.9 341 49.3
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.0e-77 295.0 256 60.9
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.5e-77 292.0 326 51.2
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.2e-76 290.0 268 57.5
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 4.2e-76 289.7 299 52.8
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.7e-75 287.0 447 39.4
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 1.5e-70 271.2 539 37.7
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.5e-68 263.8 387 41.6
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.8e-66 257.7 252 55.2
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 5.1e-66 256.1 231 57.1
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 9.1e-63 245.4 321 48.3
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 7.7e-62 242.3 204 65.7
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.5e-57 228.0 309 45.3
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 4.4e-57 226.5 169 64.5
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.7e-54 215.7 311 43.1
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 5.2e-42 176.4 534 30.9
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.7e-40 171.4 384 36.5
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 4.5e-38 163.3 556 28.2
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 7.2e-36 156.0 165 52.1
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.6e-35 154.8 182 48.9
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.6e-35 153.7 107 70.1
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 2.6e-33 147.5 520 29.4
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.8e-33 145.6 153 51.0
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.4e-24 116.3 171 42.1
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.5e-22 110.5 85 64.7
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.6e-21 106.3 63 84.1
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 6.8e-18 96.3 128 43.8
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 5.8e-17 93.2 106 53.8
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 2.2e-16 91.3 149 40.3
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 4.9e-16 90.1 125 42.4
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.9e-15 88.2 75 60.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.9e-15 88.2 75 60.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.1e-15 87.0 75 58.7
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-14 85.1 75 58.7
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.7e-14 84.3 84 53.6
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 5.1e-13 80.1 127 38.6
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 2.5e-12 77.8 55 65.5
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.2e-11 75.5 90 47.8
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.0e-09 68.2 54 68.5
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.1e-07 59.7 45 60.0


User provided reference genes

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