Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.9e-124 449.1 220 100.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 6.4e-88 327.8 212 74.5
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 3.3e-84 315.5 202 73.8
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 6.2e-83 311.2 208 69.7
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.1e-82 310.5 211 69.7
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 6.9e-82 307.8 218 67.9
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 9.0e-82 307.4 213 69.5
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.5e-81 306.6 212 69.3
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.7e-80 303.1 216 66.7
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 1.7e-80 303.1 217 67.3
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 4.9e-80 301.6 211 69.7
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 6.5e-80 301.2 203 68.5
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 6.5e-80 301.2 217 65.9
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 6.5e-80 301.2 211 69.2
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 6.5e-80 301.2 203 71.4
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 8.4e-80 300.8 214 67.8
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.1e-79 300.4 213 69.0
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.4e-79 300.1 213 68.1
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.5e-79 299.3 213 70.0
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 2.5e-79 299.3 213 68.5
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 2.5e-79 299.3 204 69.1
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 3.2e-79 298.9 205 69.8
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.2e-79 298.9 217 65.4
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.2e-79 298.5 213 68.1
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 5.5e-79 298.1 211 67.3
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 9.3e-79 297.4 217 64.5
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.2e-78 297.0 217 64.5
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 1.6e-78 296.6 211 66.4
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.7e-78 295.8 204 70.6
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 3.5e-78 295.4 219 64.8
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 4.6e-78 295.0 211 67.8
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 7.9e-78 294.3 213 65.7
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 7.9e-78 294.3 213 65.3
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 7.9e-78 294.3 212 67.0
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.0e-77 293.9 212 65.1
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 2.3e-77 292.7 213 66.7
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.9e-77 292.0 211 66.4
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 5.1e-77 291.6 204 67.6
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 6.7e-77 291.2 211 66.8
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 6.7e-77 291.2 210 66.7
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 6.7e-77 291.2 210 66.7
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 8.7e-77 290.8 212 64.6
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 8.7e-77 290.8 205 67.3
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 8.7e-77 290.8 204 69.1
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 8.7e-77 290.8 211 65.9
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.1e-76 290.4 211 66.8
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.1e-76 290.4 210 66.7
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.1e-76 290.4 210 66.7
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 4.3e-76 288.5 203 66.5
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 4.3e-76 288.5 203 66.5
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 5.7e-76 288.1 210 65.7
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 5.7e-76 288.1 213 64.8
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 3.7e-75 285.4 213 65.7
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 4.8e-75 285.0 211 66.4
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 6.3e-75 284.6 204 68.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 6.3e-75 284.6 214 63.1
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 6.3e-75 284.6 204 68.6
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.8e-74 283.1 213 62.9
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.8e-74 283.1 212 63.7
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.4e-74 282.7 215 63.3
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 3.1e-74 282.3 218 65.6
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 4.1e-74 282.0 205 64.9
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 6.9e-74 281.2 205 64.4
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 6.9e-74 281.2 212 64.2
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.2e-73 280.4 203 64.0
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.2e-73 280.4 211 64.9
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.2e-73 280.4 217 62.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.6e-73 279.3 196 67.9
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 2.6e-73 279.3 203 64.0
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 2.6e-73 279.3 209 63.2
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 5.9e-73 278.1 211 63.0
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 5.9e-73 278.1 212 63.7
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 5.9e-73 278.1 214 60.3
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-72 276.9 220 63.2
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.3e-72 276.9 211 61.6
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.7e-72 276.6 209 63.2
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 2.2e-72 276.2 218 63.3
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 3.8e-72 275.4 202 65.8
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 3.8e-72 275.4 218 63.3
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 3.8e-72 275.4 213 64.3
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 6.5e-72 274.6 204 65.2
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 6.5e-72 274.6 214 63.6
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 8.5e-72 274.2 208 64.9
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.1e-71 273.9 212 61.8
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.1e-71 273.9 202 66.3
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.5e-71 272.7 205 63.4
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 2.5e-71 272.7 208 64.4
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 2.5e-71 272.7 208 64.4
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 5.5e-71 271.6 207 63.3
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 5.5e-71 271.6 204 62.3
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 7.2e-71 271.2 205 63.4
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 7.2e-71 271.2 210 62.9
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 3.6e-70 268.9 204 64.7
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.8e-69 266.5 274 50.7
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-68 263.5 204 65.2
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 4.8e-67 258.5 211 59.2
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 8.2e-67 257.7 212 59.4
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.8e-66 256.5 204 62.3
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.4e-66 256.1 213 58.2
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 4.1e-66 255.4 213 58.7
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 6.9e-66 254.6 171 70.2
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.5e-65 253.4 203 58.6
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.0e-65 253.1 211 58.3
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 5.9e-65 251.5 189 64.0
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-64 250.4 185 66.5
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 2.2e-64 249.6 186 65.6
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 5.5e-63 245.0 202 59.9
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 1.6e-62 243.4 172 68.6
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.8e-61 240.0 211 57.8
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 5.1e-61 238.4 220 57.7
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 5.1e-61 238.4 172 67.4
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 6.7e-61 238.0 172 66.3
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.6e-60 236.1 216 54.2
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.3e-60 235.7 212 55.2
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.4e-60 235.3 206 55.8
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.4e-60 235.3 218 55.5
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.7e-59 233.4 203 58.6
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 2.8e-59 232.6 220 57.3
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.4e-58 230.3 156 68.6
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.4e-58 229.6 218 53.7
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.0e-56 224.2 216 52.8
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 5.0e-56 221.9 156 66.0
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.4e-55 220.3 201 52.7
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.9e-55 219.9 193 60.1
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 3.2e-55 219.2 211 49.8
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 3.2e-55 219.2 148 70.9
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 7.9e-54 214.5 168 60.7
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.1e-52 210.7 155 67.1
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.8e-51 206.1 145 67.6
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 1.4e-50 203.8 210 47.6
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 4.5e-49 198.7 203 55.2
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.7e-48 196.8 205 53.2
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 5.0e-48 195.3 211 50.2
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 2.7e-46 189.5 157 60.5
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 5.2e-45 185.3 153 52.9
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-42 177.6 205 50.2
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.8e-40 169.1 214 43.0
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 1.9e-39 166.8 196 42.3
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.2e-38 164.1 186 45.2
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.6e-38 163.7 210 41.9
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.3e-37 159.8 212 43.9
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.0e-37 159.1 210 43.8
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 3.4e-36 156.0 104 76.0
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 9.1e-34 147.9 95 70.5
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.9e-31 140.2 121 59.5
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 5.5e-31 138.7 203 39.4
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.8e-30 136.3 96 65.6
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 4.7e-30 135.6 203 38.4
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 9.8e-28 127.9 128 46.9
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.4e-26 122.1 181 41.4
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 6.6e-24 115.2 89 64.0
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.2e-22 110.9 82 63.4
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.1e-22 110.2 90 58.9
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 3.3e-15 86.3 194 34.5
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.1e-13 79.7 81 55.6
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.4e-12 76.3 85 45.9
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 1.2e-06 57.8 46 60.9
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 6.2e-06 55.5 42 66.7


User provided reference genes

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