Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G117 Amborella trichopoda HOM05D006802 ORTHO05D008507 3.9e-257 891.0 453 100.0
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 1.3e-106 391.0 481 50.3
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 9.1e-105 384.8 481 49.9
Atru.chr5.1503 Acer truncatum HOM05D006802 ORTHO05D008507 2.7e-104 383.3 480 46.9
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 1.3e-103 380.9 465 47.1
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 1.7e-103 380.6 465 46.7
Lj1A51G14 Lonicera japonica HOM05D006802 ORTHO05D008507 6.6e-103 378.6 469 48.8
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 1.1e-102 377.9 470 46.8
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 2.8e-101 373.2 487 46.2
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 3.6e-101 372.9 458 48.7
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 8.0e-101 371.7 468 48.3
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 1.4e-100 370.9 467 47.8
PSO170G3117 Papaver somniferum HOM05D006802 ORTHO05D008507 1.4e-100 370.9 475 46.7
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 1.8e-100 370.5 457 47.0
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 1.8e-100 370.5 467 46.3
Oeu023625.1 Olea europaea HOM05D006802 ORTHO05D008507 6.8e-100 368.6 465 47.1
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 2.6e-99 366.7 453 45.9
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 7.5e-99 365.2 462 47.4
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 7.5e-99 365.2 478 46.0
CsaV3_7G027850 Cucumis sativus L. HOM05D006802 ORTHO05D008507 1.3e-98 364.4 473 48.4
Manes.01G204700 Manihot esculenta HOM05D006802 ORTHO05D008507 2.2e-98 363.6 475 47.8
TWI75G0310 Tripterygium wilfordii HOM05D006802 ORTHO05D008507 2.2e-98 363.6 465 46.7
QL12p020415 Quercus lobata HOM05D006802 ORTHO05D008507 3.7e-98 362.8 473 48.4
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 3.7e-98 362.8 470 46.2
FAN15G2517 Fragaria x ananassa HOM05D006802 ORTHO05D008507 6.3e-98 362.1 458 46.9
FAN15G2655 Fragaria x ananassa HOM05D006802 ORTHO05D008507 6.3e-98 362.1 458 46.9
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 6.3e-98 362.1 479 46.6
FAN20G1382 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.1e-97 361.3 458 48.3
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 1.4e-97 360.9 470 46.0
MELO3C015801.2 Cucumis melo HOM05D006802 ORTHO05D008507 2.4e-97 360.1 473 48.2
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 2.4e-97 360.1 472 46.2
MD03G1259400 Malus domestica HOM05D006802 ORTHO05D008507 9.2e-97 358.2 464 47.0
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 2.0e-96 357.1 463 45.8
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 4.5e-96 355.9 462 46.8
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 5.9e-96 355.5 474 47.0
Sed0009701 Sechium edule HOM05D006802 ORTHO05D008507 5.9e-96 355.5 475 47.2
Hund02858 Selenicereus undatus HOM05D006802 ORTHO05D008507 5.9e-96 355.5 469 45.8
Duzib133G0133 Durio zibethinus HOM05D006802 ORTHO05D008507 1.3e-95 354.4 479 45.3
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 1.3e-95 354.4 460 47.4
AUR62011982 Chenopodium quinoa HOM05D006802 ORTHO05D008507 7.3e-94 348.6 484 46.1
FAN27G2418 Fragaria x ananassa HOM05D006802 ORTHO05D008507 7.3e-94 348.6 459 47.7
EL10Ac5g10508 Beta vulgaris HOM05D006802 ORTHO05D008507 1.2e-93 347.8 475 44.0
Lalb_Chr02g0142571 Lupinus albus HOM05D006802 ORTHO05D008507 1.2e-93 347.8 477 45.5
SGA_v2.0_scaffold138G35303 Striga asiatica HOM05D006802 ORTHO05D008507 2.1e-93 347.1 457 46.4
Ciclev10023787m.g Citrus clementina HOM05D006802 ORTHO05D008507 1.4e-92 344.4 432 49.1
FvH4_2g23081 Fragaria vesca HOM05D006802 ORTHO05D008507 3.1e-92 343.2 458 46.7
FAN24G3569 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.1e-92 343.2 455 46.4
SalBow4G3164 Salvia bowleyana HOM05D006802 ORTHO05D008507 3.1e-92 343.2 461 46.6
COL.COLO4_09049 Corchorus olitorius HOM05D006802 ORTHO05D008507 8.9e-92 341.7 477 45.9
Ah.11g050290 Amaranthus hybridus HOM05D006802 ORTHO05D008507 4.4e-91 339.3 475 44.2
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 6.4e-90 335.5 467 44.1
Migut.D00338 Erythranthe guttata HOM05D006802 ORTHO05D008507 6.4e-90 335.5 455 46.4
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 1.1e-89 334.7 456 45.2
AUR62032294 Chenopodium quinoa HOM05D006802 ORTHO05D008507 4.1e-89 332.8 486 45.3
Aa31LG10G17140 Aethionema arabicum HOM05D000738 ORTHO05D000675 7.0e-89 332.0 463 44.7
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 1.2e-88 331.3 472 43.6
VMungo0720G2797 Vigna mungo HOM05D006802 ORTHO05D008507 1.0e-87 328.2 469 43.9
Glyma.02G144900 Glycine max HOM05D006802 ORTHO05D008507 1.3e-87 327.8 468 44.2
Sc05g0001260 Simmondsia chinensis HOM05D006802 ORTHO05D008507 5.0e-87 325.9 469 44.8
CANSAT25G2646 Cannabis sativa HOM05D006802 ORTHO05D008507 5.6e-86 322.4 468 43.6
AL5G46150 Arabidopsis lyrata HOM05D006802 ORTHO05D008507 7.3e-86 322.0 460 44.8
Phvul.007G174300 Phaseolus vulgaris HOM05D006802 ORTHO05D008507 7.3e-86 322.0 472 44.3
Medtr1g071470 Medicago truncatula HOM05D006802 ORTHO05D008507 1.2e-85 321.2 472 45.1
TPR.G25699 Trifolium pratense HOM05D006802 ORTHO05D008507 5.2e-84 315.8 470 44.9
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 2.6e-83 313.5 460 44.3
Ca_09735_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 1.3e-82 311.2 464 44.4
Lj5g0013924 Lotus japonicus HOM05D006802 ORTHO05D008507 1.3e-82 311.2 461 44.3
CARHR291660 Cardamine hirsuta HOM05D006802 ORTHO05D008507 1.7e-82 310.8 463 43.8
unitig_8.g3726 Utricularia gibba HOM05D006802 ORTHO05D008507 1.7e-82 310.8 450 42.9
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 8.3e-82 308.5 423 44.0
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 1.4e-81 307.8 423 44.0
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 1.9e-81 307.4 468 40.4
Carub.0005s2995 Capsella rubella HOM05D006802 ORTHO05D008507 2.1e-80 303.9 414 45.2
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 6.0e-80 302.4 424 44.1
Gohir.A12G003100 Gossypium hirsutum HOM05D006802 ORTHO05D008507 7.8e-80 302.0 456 42.8
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 1.7e-79 300.8 424 43.2
SalBow4G0867 Salvia bowleyana HOM05D006802 ORTHO05D008507 1.7e-79 300.8 461 43.4
Zm00001eb202090 Zea mays HOM05D006802 ORTHO05D008507 1.7e-79 300.8 495 40.6
FAN27G1711 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.0e-79 300.1 387 47.3
Os10g0208500 Oryza sativa ssp. japonica HOM05D006802 ORTHO05D008507 4.4e-75 286.2 489 40.3
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 1.6e-72 277.7 458 40.2
arahy.Tifrunner.gnm1.ann1.BH5QN1 Arachis hypogaea HOM05D006802 ORTHO05D008507 2.3e-71 273.9 373 46.4
PGR044G0137 Punica granatum HOM05D006802 ORTHO05D008507 3.0e-71 273.5 458 40.0
PGR047G0003 Punica granatum HOM05D006802 ORTHO05D008507 3.0e-71 273.5 458 40.0
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 6.6e-71 272.3 458 38.6
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 1.5e-70 271.2 464 40.1
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 2.5e-70 270.4 463 40.2
Pp3c22_5720 Physcomitrium patens HOM05D006802 ORTHO05D008507 7.3e-70 268.9 502 36.5
MBI11_g04239_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 4.7e-69 266.2 422 39.8
Psat6g059280 Pisum sativum HOM05D006802 ORTHO05D008507 6.4e-66 255.8 351 46.4
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 1.3e-63 248.1 289 48.4
Mapoly0127s0046 Marchantia polymorpha HOM05D006802 ORTHO05D008507 1.3e-63 248.1 466 36.5
arahy.Tifrunner.gnm1.ann1.M4INHU Arachis hypogaea HOM05D006802 ORTHO05D008507 3.9e-63 246.5 378 42.6
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 9.6e-62 241.9 315 44.8
CiPaw.07G088100 Carya illinoinensis HOM05D006802 ORTHO05D008507 1.2e-61 241.5 457 37.0
AT3G63290 Arabidopsis thaliana HOM05D006802 ORTHO05D008507 6.9e-60 235.7 297 46.1
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 1.5e-59 234.6 480 34.8
BcaB02g08069 Brassica carinata HOM05D006802 ORTHO05D008507 6.0e-56 222.6 318 42.5
Actinidia21140 Actinidia chinensis HOM05D006802 ORTHO05D008507 8.7e-55 218.8 463 34.3
Hma1.2p1_1924F.1_g307700 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 4.3e-54 216.5 227 48.0
SMO358G0716 Selaginella moellendorffii HOM05D006802 ORTHO05D008507 3.1e-52 210.3 401 37.7
Gohir.D12G002800 Gossypium hirsutum HOM05D006802 ORTHO05D008507 2.4e-49 200.7 322 41.3
GSVIVG01001200001 Vitis vinifera HOM05D006802 ORTHO05D008507 4.2e-49 199.9 237 49.4
Pp3c22_5780 Physcomitrium patens HOM05D006802 ORTHO05D008507 2.4e-44 184.1 333 35.7
MBI11_g35086_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 3.8e-42 176.8 210 46.2
Dinv32894 Davidia involucrata HOM05D000738 ORTHO05D000675 8.4e-42 175.6 229 45.9
SEGI_17080 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 4.9e-34 149.8 356 30.9
SEGI_40565 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 4.9e-34 149.8 356 30.9
Glyma.10G029100 Glycine max HOM05D006802 ORTHO05D008507 1.4e-33 148.3 278 41.0
MD11G1280000 Malus domestica HOM05D006802 ORTHO05D008507 3.8e-26 123.6 124 54.8
MBI11_g35085_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 5.1e-23 113.2 140 46.4
GSVIVG01001201001 Vitis vinifera HOM05D006802 ORTHO05D008507 2.5e-22 110.9 128 50.0
Nn6g34147 Nelumbo nucifera HOM05D006802 ORTHO05D008507 4.7e-16 90.1 105 49.5
CDE05G1612 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 7.9e-16 89.4 101 48.5
HPP92_023543 Vanilla planifolia HOM05D006802 ORTHO05D008507 2.0e-14 84.7 100 45.0
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 3.7e-13 80.5 445 24.3
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 4.8e-13 80.1 347 24.8
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 5.3e-12 76.6 405 23.7
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 5.3e-12 76.6 436 22.9
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 1.5e-11 75.1 446 23.1
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 4.5e-11 73.6 402 24.4
SMO266G0057 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 7.7e-11 72.8 365 23.8
Mapoly0029s0010 Marchantia polymorpha HOM05D005850 ORTHO05D007405 1.0e-10 72.4 345 24.3
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 1.7e-10 71.6 392 24.2
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 2.2e-10 71.2 442 23.1
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 2.9e-10 70.9 379 23.7
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 2.9e-10 70.9 360 25.6
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 3.8e-10 70.5 369 24.4
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 6.5e-10 69.7 416 22.1
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 6.5e-10 69.7 398 22.9
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 8.5e-10 69.3 360 24.4
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 1.1e-09 68.9 371 24.3
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.5e-09 68.6 373 22.8
Actinidia24920 Actinidia chinensis HOM05D000738 ORTHO05D011926 1.9e-09 68.2 87 39.1
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 2.5e-09 67.8 390 24.1
CBR_g56394 Chara braunii HOM05D006802 ORTHO05D008507 2.5e-09 67.8 76 43.4
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 2.5e-09 67.8 382 24.9
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.5e-09 67.8 389 22.6
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 2.5e-09 67.8 350 22.6
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 3.2e-09 67.4 348 23.3
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 3.2e-09 67.4 383 23.5
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 4.2e-09 67.0 351 23.4
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 4.2e-09 67.0 367 24.0
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 4.2e-09 67.0 390 24.4
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 5.5e-09 66.6 345 23.8
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 7.2e-09 66.2 357 23.5
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 9.4e-09 65.9 347 24.2
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 9.4e-09 65.9 348 24.4
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 1.2e-08 65.5 373 22.5
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 1.2e-08 65.5 406 23.9
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 1.6e-08 65.1 374 23.0
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 1.6e-08 65.1 353 23.8
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 1.6e-08 65.1 376 23.7
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 1.6e-08 65.1 276 25.0
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 2.7e-08 64.3 362 23.8
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 2.7e-08 64.3 348 23.6
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 2.7e-08 64.3 354 23.7
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 3.6e-08 63.9 378 22.8
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 4.7e-08 63.5 380 22.9
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 4.7e-08 63.5 364 21.7
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 6.1e-08 63.2 370 23.5
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 6.1e-08 63.2 378 21.7
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 6.1e-08 63.2 380 23.4
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 6.1e-08 63.2 384 22.7
Lsat_1_v5_gn_5_100240 Lactuca sativa HOM05D005850 ORTHO05D007405 8.0e-08 62.8 361 23.8
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 8.0e-08 62.8 350 23.1
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 8.0e-08 62.8 416 21.6
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 1.0e-07 62.4 348 22.4
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.0e-07 62.4 377 22.8
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 1.8e-07 61.6 379 22.2
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 1.8e-07 61.6 376 23.4
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 3.0e-07 60.8 348 23.0
BcaB02g08068 Brassica carinata HOM05D006802 ORTHO05D008507 3.0e-07 60.8 38 71.1
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 3.9e-07 60.5 359 22.6
SEGI_00902 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 3.9e-07 60.5 48 62.5
SEGI_14182 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 3.9e-07 60.5 48 62.5
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 6.7e-07 59.7 396 22.2
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 8.8e-07 59.3 373 24.4
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.5e-06 58.5 366 21.9
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 4.4e-06 57.0 398 23.9
FAN27G1988 Fragaria x ananassa HOM05D006802 ORTHO05D008507 5.7e-06 56.6 43 67.4
TWI32G0506 Tripterygium wilfordii HOM05D005850 ORTHO05D007405 7.4e-06 56.2 214 25.7


User provided reference genes

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